# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.8409	a.248.1.1	133507
1w9iA	770	8.994		
2v26A	784	23.34		
2d5rB	116	26.00		
1w7jA	795	28.73	b.34.3.1,c.37.1.9	120688,120689
1y6uA	70	29.70		
1gbs	185	34.72		
1u3eM	174	36.63	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	41.30		
2gwfB	134	46.38		
2feaA	236	51.53	c.108.1.20	133327
1gbsA	185	53.71	d.2.1.5	36986
2qnuA	226	54.39		
1qw1A	121	55.05		
2b5aA	77	55.29	a.35.1.3	127882
1jpyA	137	57.08	g.17.1.6	67065
1ae7A	119	61.11	a.133.1.2	19553
2v9cA	215	61.15		
1vk3A	615	63.49	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1fe0A	68	64.25	d.58.17.1	39345
2nxoA	291	68.19		
2z15A	130	72.51		
2uwxA	494	74.92	e.3.1.1	140002
1sur	215	75.96		
2oap1	511	76.39		
1aorA	605	79.76	a.110.1.1,d.152.1.1	19042,41794