# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.6073	a.248.1.1	133507
1w9iA	770	7.973		
2v26A	784	11.62		
2d5rB	116	19.18		
1w7jA	795	19.94	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	21.45		
1u3eM	174	30.91	d.4.1.3,d.285.1.1	107640,107641
1y6uA	70	37.56		
1gbs	185	47.39		
2z15A	130	47.69		
2al3A	90	53.08	d.15.1.2	126957
2gwfB	134	54.49		
2feaA	236	56.22	c.108.1.20	133327
1jpyA	137	63.54	g.17.1.6	67065
2oap1	511	66.29		
2nxoA	291	73.90		
2cvhA	220	74.11		
1qw1A	121	75.00		
1ae7A	119	75.36	a.133.1.2	19553
2b5aA	77	78.85	a.35.1.3	127882
2ouwA	138	81.14		
1gbsA	185	83.48	d.2.1.5	36986
3c8yA	574	85.42