# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.008003 a.248.1.1 133507 2pgfA 371 0.4076 1ae7A 119 1.964 a.133.1.2 19553 1m1nA 491 2.641 c.92.2.3 78417 1qhoA 686 3.639 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1tcaA 317 4.330 c.69.1.17 34726 2rfmA 192 4.795 2d5rB 116 5.323 2feaA 236 6.380 c.108.1.20 133327 1bif 469 7.274 2zfoB 142 7.455 1nrfA 262 7.560 e.3.1.1 92086 2obwA 258 10.56 2jabA 136 10.80 2qezA 455 11.67 1mb3A 124 12.14 c.23.1.1 78907 1p2fA 220 12.61 a.4.6.1,c.23.1.1 87720,87721 1ujnA 348 13.98 e.22.1.1 99460 2jhnA 295 14.04 1g4iA 123 14.13 a.133.1.2 60241 1bifA 469 14.71 c.37.1.7,c.60.1.4 31961,34003 1mc2A 122 16.87 a.133.1.2 74622 1a2aA 122 17.16 a.133.1.2 19540 1w9iA 770 17.20 1xrsA 516 17.30 c.1.19.4 115883 1u3eM 174 17.36 d.4.1.3,d.285.1.1 107640,107641 2d74B 148 21.03 2vl6A 268 21.35 1wxxA 382 22.00 b.122.1.9,c.66.1.51 121418,121419 7aatA 401 23.02 c.67.1.1 34250 1jltB 122 23.03 a.133.1.2 66868 1y6uA 70 23.25 1bio 228 23.37 1vflA 356 23.38 c.1.9.1 120041 2z15A 130 23.41 2al3A 90 23.66 d.15.1.2 126957 2zfoA 140 25.08 1di1A 300 25.36 a.128.1.4 19446 2d2mC 147 26.00 1p1xA 260 26.28 c.1.10.1 104060 1yxlA 119 26.87 a.133.1.2 124191 1ogiA 303 27.40 b.43.4.2,c.25.1.1 92914,92915 1s6bB 119 27.66 a.133.1.2 98593 1s6bA 119 28.86 a.133.1.2 98592 1s8iA 121 29.09 a.133.1.2 98735 1z9nA 177 29.85 1abbA 828 30.71 c.87.1.4 35536 1n0qA 93 30.84 k.37.1.1 79754 1thgA 544 30.88 c.69.1.17 34763 1z9pA 155 31.58 1xngA 268 36.78 c.26.2.1 122186 1r1hA 696 37.70 d.92.1.4 104756 1dgfA 497 38.13 e.5.1.1 42782 2cxaA 256 38.22 d.108.1.6 130993 2yrrA 353 39.41 1wmhA 89 40.06 d.15.2.2 114744 2dgkA 452 40.50 2b5aA 77 41.01 a.35.1.3 127882 1oy3D 282 43.57 d.211.1.1 87554 2g3fA 421 44.71 2g5gX 268 47.47 1ars 396 47.75 2basA 431 47.79 c.1.33.1,d.110.6.2 128244,128245 2f8yA 223 48.84 3c5rA 137 49.49 1oqsB 122 49.80 a.133.1.2 93428 1gvzA 237 50.79 b.47.1.2 76360 1peqA 714 51.26 a.98.1.1,c.7.1.2 104131,104132 1m7sA 484 53.24 e.5.1.1 74574 2r6fA 972 55.86 1jpyA 137 57.16 g.17.1.6 67065 1m1qA 91 57.39 a.138.1.3 74419 1vqrA 297 59.07 a.211.1.3 114015 2vgeA 229 59.99 2z0xA 158 61.65 1fe0A 68 61.90 d.58.17.1 39345 2i9uA 439 62.66 1iow 306 62.79 1sur 215 63.08 2ovsA 118 63.48 2pgd 482 63.72 1pyoA 167 64.31 c.17.1.1 95370 1xsfA 108 65.75 2chuA 296 66.94 c.92.2.4 130485 1n9pA 207 66.99 b.1.18.16 80343 2qm8A 337 68.16 1eca 136 68.41 2prrA 197 68.66 1u55A 188 68.86 d.278.1.1 107677 2gwfB 134 69.05 1zlbA 122 69.13 a.133.1.2 125248 1qw1A 121 72.03 1ez4A 318 73.52 c.2.1.5,d.162.1.1 64917,64918 2ouwA 138 73.56 2cvhA 220 76.07 2k2rA 129 76.73 2v9cA 215 77.12 1bd8A 156 77.82 d.211.1.1 19157 2bkwA 385 80.03 c.67.1.3 128714 2zivB 351 80.83 1nnwA 252 81.21 d.159.1.5 80674 1ecaA 136 81.62 a.1.1.2 15209 1y4lA 121 81.87 a.133.1.2 122624 2zfoC 147 85.61 1x9fB 145 88.58 a.1.1.2 114984