# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.4343	a.248.1.1	133507
1w9iA	770	6.202		
1y6uA	70	17.88		
2gwfB	134	18.05		
1w7jA	795	23.41	b.34.3.1,c.37.1.9	120688,120689
2v26A	784	27.56		
1ae7A	119	27.90	a.133.1.2	19553
1qw1A	121	28.98		
1u3eM	174	33.68	d.4.1.3,d.285.1.1	107640,107641
2nxoA	291	33.95		
2v9cA	215	41.05		
2ogbA	126	41.65		
2bkhA	814	44.87		
1vk3A	615	45.19	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2fzpA	144	48.91		
1pq7A	224	55.71	b.47.1.2	95002
2al3A	90	56.61	d.15.1.2	126957
1xb4A	202	59.92	a.4.5.54,a.4.5.54	121832,121833
1gbs	185	61.24		
2j01U	118	65.89		
2qnuA	226	67.01		
2feaA	236	69.30	c.108.1.20	133327
1sur	215	69.61		
1jpyA	137	69.77	g.17.1.6	67065
2nsvA	52	70.47		
1gyoA	109	76.64	a.138.1.1	70763
1fe0A	68	79.04	d.58.17.1	39345
1ik9A	213	80.50	b.59.1.1,h.1.11.1	66176,66177
1ogiA	303	82.36	b.43.4.2,c.25.1.1	92914,92915
2d5rB	116	83.24		
1ubkS	267	83.26	e.19.1.1	88423
2zfoB	142	84.76		
2oa4A	101	87.13		
2rc5A	314	87.18		
3c8yA	574	89.06		
1yhuB	144	89.91