# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1915	a.248.1.1	133507
1w9iA	770	5.197		
2v26A	784	11.73		
1w7jA	795	11.78	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	20.69	d.4.1.3,d.285.1.1	107640,107641
1y6uA	70	21.00		
2gwfB	134	23.38		
2bkhA	814	23.64		
2nxoA	291	24.83		
1qw1A	121	27.53		
1ae7A	119	32.03	a.133.1.2	19553
1gbs	185	36.45		
1xb4A	202	45.32	a.4.5.54,a.4.5.54	121832,121833
2j01U	118	46.52		
1aorA	605	48.87	a.110.1.1,d.152.1.1	19042,41794
2ogbA	126	49.27		
2fzpA	144	52.13		
2al3A	90	52.97	d.15.1.2	126957
1ubkS	267	53.60	e.19.1.1	88423
1sur	215	56.19		
2zfoB	142	58.43		
2ouwA	138	59.95		
2v9cA	215	60.80		
1mp9A	198	62.01	d.129.1.1,d.129.1.1	91385,91386
2feaA	236	62.98	c.108.1.20	133327
1ecaA	136	63.02	a.1.1.2	15209
2pgfA	371	65.33		
1gyoA	109	66.63	a.138.1.1	70763
1x9fB	145	67.92	a.1.1.2	114984
2oy9A	98	71.09		
1yhuB	144	74.26		
2de3A	365	74.88		
1vflA	356	76.37	c.1.9.1	120041
1eca	136	76.48		
1m1qA	91	76.66	a.138.1.3	74419
2cvhA	220	77.54		
1ik9A	213	78.04	b.59.1.1,h.1.11.1	66176,66177
2oa4A	101	78.87		
2zfoC	147	79.53		
3c8yA	574	80.40		
2yztA	67	83.96		
1x46A	150	84.07