# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1928	a.248.1.1	133507
1w9iA	770	3.393		
2v26A	784	8.262		
1w7jA	795	11.61	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	16.28		
1y6uA	70	16.52		
2d5rB	116	21.49		
2nxoA	291	21.87		
1u3eM	174	22.75	d.4.1.3,d.285.1.1	107640,107641
2j01U	118	29.17		
1gbs	185	29.92		
1fe0A	68	30.38	d.58.17.1	39345
2al3A	90	35.28	d.15.1.2	126957
2gwfB	134	35.88		
1qw1A	121	40.46		
1xb4A	202	48.27	a.4.5.54,a.4.5.54	121832,121833
1ae7A	119	49.75	a.133.1.2	19553
1ubkS	267	54.23	e.19.1.1	88423
1jpyA	137	54.35	g.17.1.6	67065
2z15A	130	54.42		
1aorA	605	54.82	a.110.1.1,d.152.1.1	19042,41794
2pgfA	371	59.66		
2feaA	236	59.94	c.108.1.20	133327
2cvhA	220	65.08		
1sur	215	66.13		
2eqpA	50	66.92		
2zfoB	142	67.33		
1yhuB	144	67.54		
2ogbA	126	69.66		
2oap1	511	69.77		
1x9fB	145	73.45	a.1.1.2	114984
1ecaA	136	73.97	a.1.1.2	15209
2fzpA	144	75.61		
2oy9A	98	76.21		
2v9cA	215	76.57		
2ghjA	118	78.26		
2uwxA	494	79.26	e.3.1.1	140002
1h21A	247	81.26	a.138.1.3	76510
1vflA	356	81.81	c.1.9.1	120041
1vehA	92	82.80	d.52.8.1	113635
2nsvA	52	82.91		
1p1xA	260	83.08	c.1.10.1	104060
2ouwA	138	84.31		
1m1qA	91	84.35	a.138.1.3	74419
2qnuA	226	84.69		
1ogiA	303	85.03	b.43.4.2,c.25.1.1	92914,92915
2oa4A	101	88.60