# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3275	a.248.1.1	133507
1ogiA	303	14.76	b.43.4.2,c.25.1.1	92914,92915
2d5rB	116	22.95		
2j01U	118	26.42		
1vffA	423	28.31	c.1.8.4	120033
2qnuA	226	37.09		
1fndA	314	37.14	b.43.4.2,c.25.1.1	25626,31516
2z15A	130	38.72		
1y6uA	70	41.90		
1ae7A	119	42.67	a.133.1.2	19553
1fehA	574	44.07	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
2gwfB	134	48.86		
1fe0A	68	50.79	d.58.17.1	39345
1w9iA	770	51.51		
1u3eM	174	52.10	d.4.1.3,d.285.1.1	107640,107641
2bmwA	304	53.57	b.43.4.2,c.25.1.1	128815,128816
2ghjA	118	55.16		
1cbgA	490	59.71	c.1.8.4	28933
1aorA	605	63.20	a.110.1.1,d.152.1.1	19042,41794
2pgfA	371	64.62		
3c8yA	574	67.50		
2gokA	429	71.67		
1qw1A	121	73.63		
2o9pA	454	75.07		
2jf7A	532	78.09		
2fzpA	144	81.96		
2pytA	133	84.45		
2rc5A	314	86.87		
1w7jA	795	87.29	b.34.3.1,c.37.1.9	120688,120689