# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 7.70e-05 a.248.1.1 133507 1ogiA 303 1.074 b.43.4.2,c.25.1.1 92914,92915 2qnuA 226 1.260 1b4fA 82 2.372 a.60.1.2 17934 2j01U 118 2.644 1jb9A 316 3.073 b.43.4.2,c.25.1.1 62840,62841 2ooaA 52 3.172 2dklA 85 4.070 a.5.2.1 131555 2bmwA 304 4.985 b.43.4.2,c.25.1.1 128815,128816 1fs7A 485 5.093 a.138.1.3 19691 1v38A 78 6.291 a.60.1.2 100280 1b0xA 94 6.720 a.60.1.2 17933 1k6kA 143 7.027 a.174.1.1 77274 1bx1A 314 7.434 b.43.4.2,c.25.1.1 25629,31519 1vekA 84 7.910 a.5.2.1 113636 2eggA 297 8.129 2f3nA 76 9.079 a.60.1.2 132885 2v26A 784 9.350 1w9iA 770 9.720 1n0qA 93 10.65 k.37.1.1 79754 2bwbA 46 11.33 a.5.2.1 129329 2jabA 136 12.47 1a8oA 70 14.18 a.28.3.1 16953 1pbjA 125 16.13 d.37.1.1,d.37.1.1 94414,94415 2in3A 216 17.05 1yzxA 226 17.24 1p90A 145 17.89 c.55.5.2 94377 2zfoC 147 18.18 2nvwA 479 18.31 c.2.1.3,d.81.1.5 138665,138666 2bkhA 814 19.84 1a8o 70 20.36 1fndA 314 21.60 b.43.4.2,c.25.1.1 25626,31516 1dxsA 80 24.32 a.60.1.2 17944 1zupA 315 25.59 c.55.3.11 125681 2rfmA 192 27.85 1fipA 98 28.15 a.4.1.12 18980 2jzdA 129 31.61 1q02A 52 31.93 a.5.2.1 95490 1iqqA 200 33.44 d.124.1.1 66274 3cryA 188 34.52 1nvtA 287 34.56 c.2.1.7,c.58.1.5 86270,86271 1y6uA 70 35.22 2o1sA 621 35.97 3c9pA 123 36.59 2d2mC 147 37.47 1dv0A 47 38.36 a.5.2.1 16289 3bwlA 126 38.60 1ccwA 137 39.28 c.23.6.1 31238 2gruA 368 40.05 1z96A 40 40.09 1vg5A 73 40.77 a.5.2.1 113640 3bciA 186 41.59 2b3zA 373 41.74 c.71.1.2,c.97.1.2 127807,127808 1rxdA 159 42.43 c.45.1.1 111959 2d5cA 263 42.89 1oy3D 282 44.97 d.211.1.1 87554 2r0bA 154 45.44 1tueA 212 45.87 c.37.1.20 107323 1zp4A 304 46.53 1bedA 181 47.72 c.47.1.13 90330 2gcuA 245 48.01 3sdhA 146 48.05 a.1.1.2 14984 1zkpA 268 49.21 d.157.1.9 125205 2d1pB 119 49.73 c.114.1.1 131137 1e8cA 498 49.78 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2r7aA 256 49.86 2rc5A 314 51.01 1zelA 298 52.69 1s6lA 212 53.87 1wi9A 72 54.00 a.4.5.47 114663 2oo9A 46 54.58 2nt2A 145 55.23 2qezA 455 56.46 2r5rA 271 56.56 1wrjA 156 56.67 2ezhA 75 56.81 a.4.1.2 16029 1wgnA 63 57.51 a.5.2.1 114617 1jihA 531 57.68 d.240.1.1,e.8.1.7 90374,90375 2cobA 70 57.88 a.4.1.15 130673 1pxvA 183 58.23 d.3.1.1 95301 2ppxA 99 58.57 3bnjA 485 58.93 1m7sA 484 59.61 e.5.1.1 74574 1z0xA 220 60.54 a.4.1.9,a.121.1.1 124334,124335 1u3eM 174 61.41 d.4.1.3,d.285.1.1 107640,107641 1g5tA 196 61.54 c.37.1.11 32366 1zzoA 136 62.57 c.47.1.10 125913 2qsfX 171 62.63 2f2sA 406 63.88 2grrB 170 64.40 2cp8A 54 64.53 a.5.2.1 130695 2h5xA 196 64.56 2g0wA 296 64.91 c.1.15.4 134503 1pea 385 65.54 1u4gA 301 67.06 d.92.1.2 107670 2amjA 204 67.39 2b5aA 77 68.60 a.35.1.3 127882 2if5A 120 69.12 3c4hA 357 69.26 1qgdA 662 71.47 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 2esnA 310 71.81 a.4.5.37,c.94.1.1 132333,132334 1i7kA 179 73.94 d.20.1.1 61889 2fr1A 486 74.89 c.2.1.2,c.2.1.2 133961,133962 1s5uA 138 75.00 d.38.1.1 98573 1s9rA 410 75.29 d.126.1.4 98758 2xatA 212 76.19 b.81.1.3 28058 3cswA 285 77.42 2j16A 182 77.97 1wrmA 165 78.05 1x9fA 151 78.92 a.1.1.2 114983 1ujcA 161 79.01 1y02A 120 79.40 a.140.2.1,g.50.1.1 116278,116279 2jgqA 233 79.80 2rdzA 452 80.48 2cw2A 226 82.00 1ixsA 62 82.10 a.5.1.1 76932 1jqlB 140 82.10 c.37.1.20 63234 2i5tA 188 84.16 1zzwA 149 84.88 1sctB 151 85.76 a.1.1.2 15003 1jr2A 286 88.75 c.113.1.1 67111 2h5nA 133 89.30 1fvkA 189 89.69 c.47.1.13 90351 2izzA 322 89.90