Best Alignments for T0469

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fi0A	6.5327e-02	2fi0A/T0469-2fi0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.248.1.1
1u3eM	1.3732e+01	1u3eM/T0469-1u3eM-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.4.1.3 d.285.1.1
2bkhA	2.2489e+01	2bkhA/T0469-2bkhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w7jA	2.3161e+01	1w7jA/T0469-1w7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
2akaA	2.5852e+01	2akaA/T0469-2akaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y6uA	2.8276e+01	1y6uA/T0469-1y6uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1d0yA	3.1613e+01	1d0yA/T0469-1d0yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
2ofyA	3.3079e+01	2ofyA/T0469-2ofyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mvwA	3.5423e+01	1mvwA/T0469-1mvwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	i.15.1.1
2d5rB	3.7256e+01	2d5rB/T0469-2d5rB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwfB	3.9459e+01	2gwfB/T0469-2gwfB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w9iA	4.1941e+01	1w9iA/T0469-1w9iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s69A	4.6335e+01	1s69A/T0469-1s69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.1.1.1
1cc8A	4.6657e+01	1cc8A/T0469-1cc8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
1f0nA	4.7715e+01	1f0nA/T0469-1f0nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.69.1.3
3c8yA	4.9207e+01	3c8yA/T0469-3c8yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y75B	5.0810e+01	1y75B/T0469-1y75B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1r9lA	5.4916e+01	1r9lA/T0469-1r9lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.94.1.1
1vehA	5.6172e+01	1vehA/T0469-1vehA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.52.8.1
2d2mA	5.6449e+01	2d2mA/T0469-2d2mA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001