# TARGET T0469 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0469.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 20.9914 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.004 0.017 0.653 0.007 0.026 0.018 0.001 0.001 0.033 0.113 0.034 0.037 0.056 2 T 0.002 0.012 0.710 0.011 0.047 0.016 0.001 0.001 0.019 0.069 0.035 0.018 0.060 3 Q 0.006 0.022 0.398 0.015 0.141 0.044 0.005 0.002 0.042 0.117 0.064 0.081 0.065 4 K 0.010 0.033 0.407 0.008 0.065 0.030 0.008 0.005 0.082 0.077 0.045 0.059 0.171 5 F 0.006 0.058 0.495 0.007 0.049 0.044 0.006 0.005 0.081 0.092 0.040 0.042 0.075 6 T 0.001 0.006 0.800 0.006 0.028 0.021 0.001 0.001 0.013 0.062 0.023 0.020 0.017 7 K 0.001 0.006 0.106 0.004 0.141 0.169 0.001 0.001 0.009 0.116 0.436 0.004 0.008 8 D 0.001 0.013 0.275 0.005 0.048 0.223 0.001 0.001 0.009 0.156 0.256 0.004 0.010 9 M 0.002 0.034 0.400 0.002 0.023 0.265 0.001 0.001 0.012 0.218 0.016 0.020 0.010 10 T 0.004 0.018 0.541 0.001 0.007 0.282 0.001 0.001 0.015 0.058 0.010 0.012 0.052 11 F 0.001 0.003 0.013 0.001 0.016 0.942 0.001 0.001 0.001 0.004 0.014 0.001 0.006 12 A 0.001 0.001 0.002 0.001 0.014 0.976 0.001 0.001 0.001 0.001 0.005 0.001 0.001 13 Q 0.001 0.001 0.001 0.001 0.035 0.955 0.001 0.001 0.001 0.001 0.005 0.001 0.002 14 A 0.001 0.001 0.001 0.001 0.019 0.966 0.001 0.001 0.001 0.001 0.012 0.001 0.001 15 L 0.001 0.001 0.002 0.001 0.039 0.912 0.001 0.001 0.001 0.001 0.041 0.001 0.002 16 Q 0.001 0.001 0.004 0.001 0.030 0.833 0.001 0.001 0.001 0.005 0.125 0.001 0.001 17 T 0.001 0.004 0.026 0.001 0.016 0.768 0.001 0.001 0.001 0.026 0.154 0.001 0.002 18 H 0.001 0.004 0.483 0.001 0.006 0.275 0.001 0.001 0.001 0.189 0.035 0.003 0.004 19 P 0.001 0.001 0.031 0.001 0.028 0.687 0.001 0.001 0.001 0.014 0.239 0.001 0.001 20 G 0.001 0.001 0.035 0.001 0.046 0.610 0.001 0.001 0.001 0.040 0.265 0.001 0.001 21 V 0.001 0.003 0.084 0.001 0.035 0.829 0.001 0.001 0.001 0.020 0.023 0.001 0.004 22 A 0.001 0.002 0.026 0.001 0.006 0.937 0.001 0.001 0.002 0.013 0.011 0.001 0.001 23 G 0.001 0.003 0.009 0.001 0.014 0.939 0.001 0.001 0.004 0.011 0.014 0.001 0.005 24 V 0.001 0.001 0.004 0.001 0.013 0.945 0.001 0.001 0.001 0.002 0.024 0.001 0.007 25 L 0.001 0.001 0.002 0.002 0.027 0.935 0.001 0.001 0.001 0.001 0.023 0.001 0.005 26 R 0.001 0.001 0.002 0.001 0.041 0.934 0.001 0.001 0.001 0.002 0.014 0.003 0.001 27 S 0.002 0.001 0.005 0.001 0.043 0.879 0.001 0.001 0.001 0.005 0.054 0.002 0.005 28 Y 0.002 0.003 0.027 0.007 0.035 0.452 0.001 0.001 0.001 0.040 0.424 0.005 0.003 29 N 0.001 0.003 0.082 0.002 0.010 0.062 0.001 0.001 0.001 0.070 0.765 0.002 0.002 30 L 0.001 0.014 0.513 0.003 0.034 0.048 0.001 0.001 0.004 0.210 0.158 0.006 0.008 31 G 0.002 0.030 0.367 0.003 0.028 0.048 0.001 0.002 0.020 0.279 0.186 0.021 0.014 32 C 0.003 0.034 0.457 0.005 0.080 0.063 0.003 0.008 0.032 0.142 0.128 0.010 0.036 33 I 0.004 0.029 0.365 0.014 0.067 0.058 0.004 0.009 0.033 0.238 0.144 0.020 0.015 34 G 0.005 0.028 0.350 0.007 0.041 0.048 0.003 0.006 0.056 0.270 0.135 0.020 0.032 35 C 0.003 0.019 0.561 0.004 0.027 0.041 0.002 0.004 0.043 0.206 0.039 0.019 0.031 36 M 0.004 0.033 0.402 0.008 0.069 0.127 0.003 0.003 0.026 0.157 0.107 0.015 0.047 37 G 0.004 0.020 0.215 0.008 0.151 0.257 0.002 0.002 0.017 0.124 0.165 0.016 0.020 38 A 0.004 0.013 0.205 0.005 0.172 0.308 0.001 0.001 0.008 0.109 0.150 0.007 0.017 39 Q 0.002 0.014 0.144 0.004 0.099 0.443 0.001 0.001 0.007 0.084 0.181 0.006 0.015 40 N 0.001 0.008 0.092 0.002 0.034 0.649 0.001 0.001 0.004 0.064 0.134 0.004 0.007 41 E 0.002 0.010 0.083 0.001 0.026 0.686 0.001 0.001 0.004 0.110 0.064 0.007 0.006 42 S 0.002 0.009 0.148 0.001 0.024 0.716 0.001 0.001 0.003 0.036 0.032 0.003 0.027 43 L 0.001 0.001 0.008 0.001 0.009 0.967 0.001 0.001 0.001 0.002 0.011 0.001 0.001 44 E 0.001 0.001 0.002 0.001 0.012 0.978 0.001 0.001 0.001 0.002 0.006 0.001 0.001 45 Q 0.001 0.001 0.002 0.001 0.013 0.972 0.001 0.001 0.001 0.003 0.008 0.001 0.001 46 G 0.001 0.001 0.003 0.001 0.011 0.968 0.001 0.001 0.001 0.002 0.013 0.001 0.001 47 A 0.001 0.001 0.003 0.001 0.035 0.871 0.001 0.001 0.001 0.002 0.084 0.001 0.002 48 N 0.001 0.001 0.003 0.001 0.045 0.879 0.001 0.001 0.001 0.004 0.065 0.001 0.001 49 A 0.001 0.003 0.013 0.001 0.127 0.754 0.001 0.001 0.001 0.010 0.088 0.001 0.002 50 H 0.001 0.002 0.021 0.001 0.042 0.196 0.001 0.001 0.001 0.051 0.682 0.001 0.001 51 G 0.001 0.009 0.125 0.001 0.019 0.052 0.001 0.001 0.003 0.099 0.691 0.001 0.002 52 L 0.001 0.041 0.639 0.001 0.004 0.022 0.001 0.001 0.005 0.265 0.019 0.003 0.002 53 N 0.001 0.003 0.857 0.001 0.001 0.004 0.001 0.001 0.003 0.125 0.002 0.001 0.003 54 V 0.001 0.001 0.035 0.001 0.110 0.806 0.001 0.001 0.001 0.007 0.042 0.001 0.001 55 E 0.001 0.001 0.003 0.001 0.051 0.934 0.001 0.001 0.001 0.005 0.007 0.001 0.001 56 D 0.001 0.001 0.002 0.001 0.099 0.894 0.001 0.001 0.001 0.003 0.002 0.001 0.001 57 I 0.001 0.001 0.003 0.001 0.011 0.974 0.001 0.001 0.001 0.004 0.007 0.001 0.001 58 L 0.001 0.001 0.001 0.001 0.018 0.949 0.001 0.001 0.001 0.001 0.030 0.001 0.001 59 R 0.001 0.001 0.001 0.001 0.046 0.825 0.001 0.001 0.001 0.001 0.128 0.001 0.001 60 D 0.001 0.001 0.001 0.001 0.052 0.902 0.001 0.001 0.001 0.001 0.044 0.001 0.001 61 L 0.001 0.002 0.005 0.001 0.075 0.862 0.001 0.001 0.001 0.005 0.050 0.001 0.001 62 N 0.001 0.002 0.012 0.001 0.041 0.283 0.001 0.001 0.001 0.014 0.648 0.001 0.001 63 A 0.001 0.004 0.075 0.001 0.034 0.125 0.001 0.001 0.002 0.041 0.718 0.001 0.001 64 L 0.001 0.024 0.505 0.001 0.020 0.078 0.001 0.001 0.007 0.259 0.105 0.001 0.001 65 A 0.001 0.009 0.596 0.001 0.012 0.019 0.001 0.001 0.024 0.311 0.026 0.001 0.001