# TARGET T0469 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0469.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 20.9914 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.124 0.072 0.165 0.254 0.016 0.100 0.027 0.009 0.014 0.006 0.037 0.041 0.099 0.010 0.008 0.019 2 T 0.026 0.159 0.286 0.378 0.006 0.028 0.007 0.013 0.008 0.002 0.013 0.014 0.032 0.002 0.011 0.015 3 Q 0.018 0.029 0.079 0.808 0.002 0.012 0.002 0.002 0.006 0.002 0.007 0.005 0.011 0.001 0.002 0.014 4 K 0.022 0.027 0.236 0.624 0.006 0.052 0.001 0.001 0.003 0.001 0.003 0.004 0.009 0.001 0.001 0.011 5 F 0.010 0.037 0.066 0.782 0.024 0.046 0.002 0.003 0.001 0.001 0.012 0.003 0.008 0.001 0.001 0.004 6 T 0.001 0.027 0.006 0.026 0.018 0.882 0.002 0.006 0.001 0.001 0.004 0.016 0.007 0.001 0.001 0.001 7 K 0.002 0.011 0.002 0.020 0.004 0.006 0.001 0.017 0.001 0.001 0.913 0.005 0.011 0.002 0.002 0.002 8 D 0.007 0.171 0.032 0.045 0.001 0.013 0.002 0.007 0.027 0.001 0.005 0.619 0.012 0.001 0.031 0.027 9 M 0.020 0.012 0.760 0.067 0.001 0.002 0.005 0.001 0.002 0.001 0.002 0.003 0.030 0.001 0.003 0.094 10 T 0.011 0.001 0.014 0.002 0.002 0.919 0.002 0.001 0.001 0.001 0.003 0.007 0.037 0.001 0.001 0.001 11 F 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.974 0.002 0.013 0.001 0.001 0.001 12 A 0.001 0.015 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.953 0.023 0.001 0.001 0.001 13 Q 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.977 0.001 0.001 0.007 14 A 0.001 0.001 0.006 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.003 0.011 0.963 0.002 0.001 0.008 15 L 0.001 0.001 0.002 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.006 0.976 0.004 0.002 0.002 16 Q 0.001 0.002 0.002 0.003 0.001 0.002 0.006 0.001 0.001 0.001 0.004 0.001 0.931 0.025 0.008 0.013 17 T 0.004 0.034 0.023 0.017 0.001 0.003 0.011 0.003 0.004 0.001 0.006 0.023 0.672 0.015 0.038 0.146 18 H 0.008 0.001 0.011 0.001 0.002 0.034 0.088 0.001 0.001 0.002 0.003 0.009 0.766 0.054 0.008 0.012 19 P 0.005 0.005 0.009 0.002 0.001 0.007 0.001 0.016 0.001 0.001 0.339 0.006 0.557 0.002 0.045 0.005 20 G 0.002 0.014 0.002 0.004 0.001 0.010 0.003 0.001 0.009 0.008 0.034 0.532 0.353 0.003 0.001 0.024 21 V 0.006 0.001 0.006 0.001 0.001 0.002 0.007 0.001 0.001 0.001 0.014 0.029 0.921 0.006 0.004 0.001 22 A 0.001 0.005 0.005 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.016 0.070 0.888 0.001 0.005 0.004 23 G 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.989 0.001 0.001 0.001 24 V 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.989 0.001 0.001 0.001 25 L 0.001 0.001 0.001 0.003 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.009 0.977 0.002 0.001 0.001 26 R 0.001 0.001 0.002 0.004 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.980 0.002 0.004 0.002 27 S 0.001 0.003 0.005 0.009 0.008 0.002 0.037 0.001 0.001 0.001 0.003 0.002 0.370 0.511 0.004 0.044 28 Y 0.011 0.005 0.037 0.008 0.002 0.006 0.028 0.023 0.001 0.001 0.006 0.006 0.363 0.031 0.447 0.025 29 N 0.006 0.016 0.058 0.009 0.025 0.026 0.131 0.007 0.020 0.026 0.018 0.009 0.195 0.142 0.026 0.287 30 L 0.299 0.033 0.032 0.027 0.011 0.014 0.039 0.067 0.004 0.003 0.048 0.013 0.155 0.035 0.188 0.031 31 G 0.026 0.105 0.212 0.059 0.006 0.054 0.016 0.021 0.073 0.059 0.018 0.070 0.107 0.006 0.030 0.138 32 C 0.068 0.011 0.032 0.021 0.128 0.098 0.207 0.004 0.009 0.016 0.080 0.037 0.155 0.116 0.004 0.015 33 I 0.015 0.067 0.052 0.039 0.009 0.019 0.010 0.424 0.002 0.001 0.071 0.046 0.096 0.007 0.134 0.005 34 G 0.008 0.059 0.036 0.093 0.005 0.029 0.022 0.008 0.258 0.195 0.019 0.084 0.061 0.008 0.009 0.106 35 C 0.252 0.011 0.064 0.021 0.034 0.061 0.130 0.006 0.007 0.008 0.057 0.050 0.248 0.032 0.011 0.008 36 M 0.016 0.049 0.074 0.086 0.006 0.042 0.009 0.106 0.003 0.003 0.266 0.091 0.185 0.007 0.044 0.012 37 G 0.017 0.029 0.025 0.061 0.004 0.044 0.013 0.004 0.070 0.047 0.053 0.304 0.256 0.007 0.008 0.059 38 A 0.022 0.012 0.030 0.023 0.011 0.016 0.031 0.003 0.001 0.001 0.059 0.058 0.693 0.020 0.010 0.010 39 Q 0.004 0.030 0.040 0.035 0.001 0.051 0.008 0.019 0.002 0.002 0.070 0.143 0.541 0.006 0.019 0.027 40 N 0.007 0.008 0.023 0.016 0.001 0.068 0.015 0.002 0.010 0.003 0.056 0.064 0.687 0.006 0.006 0.027 41 E 0.020 0.045 0.073 0.037 0.001 0.005 0.005 0.002 0.001 0.001 0.056 0.092 0.641 0.002 0.008 0.012 42 S 0.001 0.001 0.004 0.002 0.001 0.151 0.004 0.001 0.001 0.001 0.009 0.060 0.764 0.001 0.001 0.002 43 L 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.196 0.010 0.781 0.001 0.001 0.001 44 E 0.001 0.020 0.001 0.004 0.001 0.001 0.003 0.001 0.001 0.001 0.009 0.381 0.564 0.008 0.005 0.001 45 Q 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.004 0.980 0.001 0.005 0.004 46 G 0.001 0.001 0.016 0.006 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.004 0.944 0.004 0.002 0.017 47 A 0.002 0.001 0.006 0.007 0.001 0.002 0.005 0.001 0.001 0.001 0.002 0.004 0.958 0.005 0.004 0.004 48 N 0.001 0.001 0.003 0.008 0.003 0.008 0.004 0.001 0.001 0.001 0.002 0.002 0.932 0.018 0.003 0.013 49 A 0.001 0.001 0.001 0.001 0.012 0.001 0.029 0.001 0.001 0.001 0.002 0.001 0.015 0.935 0.001 0.002 50 H 0.001 0.003 0.005 0.001 0.001 0.001 0.001 0.037 0.001 0.001 0.001 0.003 0.014 0.001 0.926 0.007 51 G 0.001 0.001 0.015 0.002 0.001 0.003 0.003 0.001 0.029 0.004 0.001 0.001 0.007 0.001 0.001 0.933 52 L 0.917 0.015 0.048 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.002 53 N 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.001 54 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 55 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 56 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.993 0.001 0.001 0.001 57 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 58 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 59 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 60 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.965 0.016 0.001 0.016 61 L 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.981 0.005 0.008 0.002 62 N 0.001 0.001 0.003 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.950 0.010 0.008 0.023 63 A 0.004 0.003 0.002 0.002 0.001 0.001 0.024 0.001 0.001 0.001 0.004 0.004 0.752 0.121 0.013 0.068 64 L 0.008 0.005 0.039 0.002 0.001 0.002 0.100 0.002 0.001 0.001 0.003 0.011 0.599 0.099 0.092 0.037 65 A 0.007 0.012 0.078 0.012 0.002 0.011 0.072 0.010 0.002 0.002 0.015 0.008 0.487 0.035 0.131 0.116