# TARGET T0469 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0469.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 20.9914 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.040 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.110 0.049 0.117 0.663 2 T 0.029 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.106 0.081 0.097 0.675 3 Q 0.011 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.003 0.004 0.001 0.002 0.001 0.002 0.002 0.206 0.056 0.121 0.573 4 K 0.010 0.011 0.001 0.001 0.003 0.004 0.002 0.001 0.003 0.002 0.002 0.001 0.004 0.003 0.003 0.003 0.248 0.042 0.105 0.550 5 F 0.023 0.012 0.002 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.003 0.002 0.247 0.029 0.090 0.579 6 T 0.510 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.079 0.148 0.048 0.191 7 K 0.028 0.099 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.094 0.049 0.115 0.613 8 D 0.013 0.089 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.009 0.109 0.749 9 M 0.007 0.303 0.002 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.275 0.048 0.069 0.287 10 T 0.017 0.898 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.018 0.014 0.037 11 F 0.021 0.947 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.009 0.003 0.014 12 A 0.039 0.836 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.044 0.007 0.059 13 Q 0.083 0.160 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.545 0.030 0.135 14 A 0.264 0.215 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.281 0.044 0.156 15 L 0.458 0.028 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.074 0.073 0.344 16 Q 0.009 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.009 0.064 0.905 17 T 0.010 0.043 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.009 0.108 0.823 18 H 0.136 0.469 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.126 0.061 0.196 19 P 0.069 0.520 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.076 0.064 0.253 20 G 0.035 0.739 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.033 0.034 0.137 21 V 0.022 0.828 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.018 0.018 0.090 22 A 0.027 0.835 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.025 0.011 0.080 23 G 0.044 0.586 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.002 0.001 0.038 0.165 0.024 0.123 24 V 0.046 0.461 0.017 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.233 0.033 0.145 25 L 0.138 0.144 0.107 0.004 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.264 0.048 0.232 26 R 0.264 0.058 0.016 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.037 0.080 0.493 27 S 0.103 0.019 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.039 0.080 0.732 28 Y 0.055 0.023 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.043 0.191 0.637 29 N 0.075 0.029 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.065 0.057 0.140 0.626 30 L 0.032 0.021 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.036 0.148 0.681 31 G 0.049 0.038 0.002 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.235 0.081 0.106 0.470 32 C 0.149 0.033 0.002 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.002 0.001 0.003 0.002 0.001 0.001 0.110 0.111 0.113 0.463 33 I 0.024 0.046 0.002 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.002 0.185 0.064 0.138 0.524 34 G 0.033 0.059 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.154 0.069 0.117 0.552 35 C 0.153 0.096 0.006 0.002 0.003 0.004 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.128 0.150 0.099 0.346 36 M 0.071 0.088 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.105 0.119 0.122 0.480 37 G 0.091 0.129 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.114 0.057 0.110 0.487 38 A 0.085 0.040 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.088 0.257 0.104 0.413 39 Q 0.021 0.347 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.084 0.074 0.418 40 N 0.064 0.557 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.034 0.042 0.283 41 E 0.013 0.570 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.134 0.047 0.186 42 S 0.009 0.862 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.078 0.009 0.034 43 L 0.013 0.961 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.002 0.010 44 E 0.016 0.613 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.321 0.005 0.033 45 Q 0.018 0.863 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.055 0.008 0.042 46 G 0.067 0.577 0.078 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.174 0.014 0.077 47 A 0.069 0.029 0.415 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.338 0.018 0.122 48 N 0.499 0.009 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.041 0.441 49 A 0.038 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.021 0.048 0.886 50 H 0.013 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.010 0.165 0.794 51 G 0.008 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.063 0.919 52 L 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.012 0.131 0.805 53 N 0.011 0.946 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.013 0.003 0.024 54 V 0.011 0.973 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.001 0.003 55 E 0.004 0.939 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.001 0.013 56 D 0.014 0.931 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.001 0.011 57 I 0.016 0.929 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.001 0.005 58 L 0.018 0.542 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.404 0.002 0.016 59 R 0.023 0.873 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.005 0.054 60 D 0.057 0.828 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.011 0.052 61 L 0.122 0.545 0.083 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.110 0.029 0.106 62 N 0.200 0.185 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.159 0.054 0.365 63 A 0.077 0.081 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.045 0.122 0.656 64 L 0.064 0.062 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.067 0.126 0.649 65 A 0.039 0.040 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.053 0.134 0.684