# TARGET T0469 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0469.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 20.9914 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.098 0.030 0.016 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.011 0.057 0.710 2 T 0.029 0.023 0.006 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.005 0.075 0.739 3 Q 0.042 0.016 0.003 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.003 0.002 0.151 0.006 0.068 0.690 4 K 0.072 0.037 0.006 0.002 0.003 0.002 0.003 0.002 0.001 0.001 0.003 0.001 0.016 0.010 0.006 0.003 0.193 0.008 0.168 0.464 5 F 0.058 0.047 0.002 0.001 0.002 0.001 0.001 0.001 0.003 0.006 0.003 0.001 0.003 0.001 0.001 0.001 0.347 0.006 0.144 0.370 6 T 0.036 0.085 0.004 0.001 0.001 0.001 0.001 0.002 0.042 0.018 0.005 0.003 0.002 0.001 0.001 0.002 0.290 0.013 0.081 0.411 7 K 0.017 0.054 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.143 0.006 0.084 0.686 8 D 0.044 0.035 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.022 0.440 0.397 9 M 0.342 0.049 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.097 0.025 0.119 0.334 10 T 0.038 0.107 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.080 0.003 0.402 0.360 11 F 0.026 0.176 0.008 0.001 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.161 0.013 0.118 0.476 12 A 0.025 0.299 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.063 0.007 0.120 0.474 13 Q 0.014 0.419 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.004 0.317 0.229 14 A 0.051 0.819 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.006 0.008 0.105 15 L 0.013 0.936 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.003 0.039 16 Q 0.086 0.816 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.028 0.004 0.061 17 T 0.395 0.419 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.131 0.001 0.043 18 H 0.496 0.222 0.046 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.064 0.008 0.157 19 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 20 G 0.021 0.022 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.008 0.135 0.777 21 V 0.538 0.064 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.009 0.053 0.320 22 A 0.111 0.397 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.114 0.007 0.058 0.307 23 G 0.043 0.371 0.007 0.001 0.003 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.105 0.009 0.103 0.348 24 V 0.049 0.526 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.097 0.008 0.048 0.257 25 L 0.018 0.762 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.087 0.008 0.021 0.092 26 R 0.030 0.728 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.019 0.021 0.133 27 S 0.066 0.644 0.010 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.039 0.019 0.161 28 Y 0.177 0.420 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.126 0.026 0.157 29 N 0.214 0.186 0.053 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.112 0.044 0.340 30 L 0.107 0.083 0.271 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.061 0.035 0.058 0.373 31 G 0.066 0.087 0.032 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.019 0.142 0.526 32 C 0.159 0.055 0.019 0.004 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.013 0.108 0.565 33 I 0.080 0.117 0.013 0.003 0.002 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.200 0.014 0.112 0.447 34 G 0.085 0.059 0.007 0.002 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.127 0.015 0.099 0.591 35 C 0.121 0.044 0.019 0.002 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.101 0.009 0.118 0.569 36 M 0.036 0.050 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.128 0.005 0.094 0.671 37 G 0.085 0.081 0.004 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.111 0.010 0.125 0.568 38 A 0.143 0.159 0.007 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.070 0.015 0.126 0.463 39 Q 0.163 0.279 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.050 0.015 0.092 0.393 40 N 0.188 0.344 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.027 0.050 0.351 41 E 0.155 0.321 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.012 0.143 0.317 42 S 0.051 0.352 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.007 0.193 0.380 43 L 0.067 0.616 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.027 0.029 0.220 44 E 0.012 0.837 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.003 0.052 0.083 45 Q 0.013 0.767 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.142 0.072 46 G 0.032 0.942 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.007 0.001 0.015 47 A 0.008 0.974 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.013 48 N 0.011 0.945 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.007 0.003 0.029 49 A 0.037 0.924 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.001 0.026 50 H 0.139 0.759 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.064 0.002 0.031 51 G 0.553 0.132 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.113 0.008 0.151 52 L 0.025 0.009 0.840 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.027 0.086 53 N 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.598 0.376 54 V 0.004 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.045 0.936 55 E 0.002 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.481 0.494 56 D 0.032 0.050 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.676 0.241 57 I 0.012 0.963 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 58 L 0.001 0.980 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 59 R 0.002 0.983 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 60 D 0.022 0.952 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.011 61 L 0.047 0.923 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.001 0.009 62 N 0.025 0.898 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.001 0.046 63 A 0.085 0.717 0.016 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.001 0.122 64 L 0.209 0.616 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.039 0.003 0.118 65 A 0.179 0.540 0.019 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.019 0.024 0.208