# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1179	a.248.1.1	133507
1w7jA	795	7.483	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	7.811	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	9.048		
2akaA	776	11.17		
1y6uA	70	11.57		
1mvwA	840	14.65	i.15.1.1	79523
1d0yA	761	14.83	b.34.3.1,c.37.1.9	24581,32178
1r9lA	309	15.95	c.94.1.1	97262
1f0nA	285	16.03	c.69.1.3	34636
1s69A	124	19.97	a.1.1.1	105305
2d2mA	140	21.12		
1w9iA	770	25.11		
2ouwA	138	26.79		
2ofyA	86	30.56		
3c8yA	574	33.11		
2v26A	784	34.02		
2al3A	90	35.33	d.15.1.2	126957
1idrA	136	35.52	a.1.1.1	62301
2d5rB	116	37.79		
1tikA	213	40.70	c.23.5.3	107003
1dlwA	116	40.76	a.1.1.1	14982
1yhuB	144	42.58		
1s6lA	212	46.96		
2gwfB	134	48.60		
1y75B	118	49.70		
2gdjA	264	51.14	c.37.1.11	135018
2nxoA	291	52.62		
3b5mA	205	53.61		
1lvk	762	55.58		
2f6mA	65	55.75	a.2.17.1	133051
2amxA	376	57.01	c.1.9.1	127024
2fjrA	189	58.27		
2j01U	118	58.66		
1x9fB	145	59.62	a.1.1.2	114984
2aa1A	144	61.46	a.1.1.2	126463
1xb4A	202	62.01	a.4.5.54,a.4.5.54	121832,121833
2b5aA	77	63.08	a.35.1.3	127882
2cfmA	561	66.08		
1zupA	315	66.60	c.55.3.11	125681
1gyzA	60	66.64	a.144.2.1	70793
1aorA	605	67.76	a.110.1.1,d.152.1.1	19042,41794
2oa4A	101	67.85		
1ithA	141	69.37	a.1.1.2	15623
2zfoA	140	69.53		
2qnuA	226	71.60		
1wuiS	267	72.02	e.19.1.1	121290
1fx7A	230	74.54	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1eca	136	75.14		
1vflA	356	76.13	c.1.9.1	120041
1mp9A	198	77.67	d.129.1.1,d.129.1.1	91385,91386
1gbsA	185	79.51	d.2.1.5	36986
1h2eA	207	81.88	c.60.1.1	70857
1ae7A	119	82.57	a.133.1.2	19553
2d2mB	142	84.60		
1e0gA	48	84.62	d.7.1.1	37325
2h8fA	143	85.25	a.1.1.2	136239
2pgfA	371	86.08		
1cg5B	141	86.85	a.1.1.2	15585
1ubkS	267	88.89	e.19.1.1	88423
2ieaA	886	89.24	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296