# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.06571	a.248.1.1	133507
2akaA	776	4.699		
2bkhA	814	4.804		
1mvwA	840	4.943	i.15.1.1	79523
1w7jA	795	5.203	b.34.3.1,c.37.1.9	120688,120689
1d0yA	761	5.653	b.34.3.1,c.37.1.9	24581,32178
1u3eM	174	5.966	d.4.1.3,d.285.1.1	107640,107641
1y6uA	70	6.573		
1y75B	118	7.042		
1w9iA	770	10.40		
2d5rB	116	11.48		
1r9lA	309	13.47	c.94.1.1	97262
1s69A	124	13.66	a.1.1.1	105305
1dlwA	116	15.89	a.1.1.1	14982
1idrA	136	15.91	a.1.1.1	62301
3c8yA	574	16.59		
1tikA	213	17.13	c.23.5.3	107003
1f0nA	285	17.77	c.69.1.3	34636
2gwfB	134	18.00		
2d2mA	140	18.89		
1s6lA	212	19.54		
2v26A	784	21.01		
1h2eA	207	21.92	c.60.1.1	70857
1ae7A	119	24.07	a.133.1.2	19553
2al3A	90	24.48	d.15.1.2	126957
2nxoA	291	24.56		
1lvk	762	25.81		
1yhuB	144	26.69		
2ofyA	86	27.00		
2j01U	118	29.74		
2qnuA	226	30.45		
2ouwA	138	32.16		
2z15A	130	32.54		
2gdjA	264	35.32	c.37.1.11	135018
2fjrA	189	37.91		
1mp9A	198	46.46	d.129.1.1,d.129.1.1	91385,91386
1gyzA	60	47.90	a.144.2.1	70793
1zupA	315	49.15	c.55.3.11	125681
2ogbA	126	49.54		
1qnaA	200	52.57	d.129.1.1,d.129.1.1	41226,41227
2fzpA	144	52.61		
1fx7A	230	52.94	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2ghjA	118	53.31		
1xb4A	202	54.91	a.4.5.54,a.4.5.54	121832,121833
1kbjA	412	55.74	c.1.4.1	72280
2z98A	200	58.39		
1vehA	92	59.90	d.52.8.1	113635
1azo	232	61.01		
1ubkS	267	61.11	e.19.1.1	88423
1wuiS	267	63.04	e.19.1.1	121290
1bedA	181	63.67	c.47.1.13	90330
2nsvA	52	67.44		
2amxA	376	70.75	c.1.9.1	127024
2ag6A	314	71.29		
2cfmA	561	72.85		
2oq2A	261	73.95		
1e0gA	48	74.72	d.7.1.1	37325
1aorA	605	76.36	a.110.1.1,d.152.1.1	19042,41794
2qisA	374	77.53		
2ezhA	75	78.70	a.4.1.2	16029
1chuA	540	78.82	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
2f6mA	65	79.80	a.2.17.1	133051
2b5aA	77	81.10	a.35.1.3	127882
2oa4A	101	83.58		
1eca	136	85.01		
2vl6A	268	87.89