# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.02876	a.248.1.1	133507
2akaA	776	4.177		
1u3eM	174	4.255	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	5.325		
1w7jA	795	5.355	b.34.3.1,c.37.1.9	120688,120689
1d0yA	761	5.437	b.34.3.1,c.37.1.9	24581,32178
1mvwA	840	7.657	i.15.1.1	79523
1dlwA	116	8.691	a.1.1.1	14982
1w9iA	770	8.723		
2ouwA	138	12.00		
2d5rB	116	13.23		
1y6uA	70	14.21		
1s6lA	212	14.89		
2v26A	784	16.41		
1lvk	762	16.94		
2j01U	118	17.39		
2cfmA	561	21.04		
1idrA	136	21.95	a.1.1.1	62301
2al3A	90	22.73	d.15.1.2	126957
2d2mA	140	22.89		
2gdjA	264	26.38	c.37.1.11	135018
1e0gA	48	27.07	d.7.1.1	37325
1mp9A	198	28.07	d.129.1.1,d.129.1.1	91385,91386
2amxA	376	28.10	c.1.9.1	127024
1s69A	124	28.58	a.1.1.1	105305
2ghjA	118	29.50		
2gwfB	134	31.75		
1f0nA	285	32.05	c.69.1.3	34636
2z15A	130	33.13		
1xb4A	202	33.16	a.4.5.54,a.4.5.54	121832,121833
1yhuB	144	34.05		
2oy9A	98	36.46		
1r9lA	309	36.73	c.94.1.1	97262
1e39A	571	37.57	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
2nsaA	170	39.03		
2nxoA	291	43.29		
2ofyA	86	44.02		
1aorA	605	45.40	a.110.1.1,d.152.1.1	19042,41794
2cobA	70	45.47	a.4.1.15	130673
2pgfA	371	46.04		
2z2mA	168	46.41		
1wuiS	267	49.52	e.19.1.1	121290
1qo8A	566	50.20	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
2zc3A	168	50.66		
1vflA	356	51.62	c.1.9.1	120041
1qnaA	200	51.80	d.129.1.1,d.129.1.1	41226,41227
2de3A	365	52.51		
3c6fA	153	55.93		
2cwcA	303	57.19		
2b5aA	77	57.85	a.35.1.3	127882
1x9fB	145	58.30	a.1.1.2	114984
1azo	232	58.92		
1u55A	188	59.81	d.278.1.1	107677
2ip2A	334	65.28		
3c8yA	574	65.34		
2hp0A	466	65.74		
3clmA	352	66.97		
2fzpA	144	67.13		
1ubkS	267	69.04	e.19.1.1	88423
1a4mA	349	70.43	c.1.9.1	29014
2fjrA	189	71.08		
2d0iA	333	72.12		
2hinA	71	72.15		
1x19A	359	75.01		
2ogbA	126	77.23		
1bedA	181	77.75	c.47.1.13	90330
2rcyA	262	78.31		
2ezhA	75	78.65	a.4.1.2	16029
2i1qA	322	78.70	a.60.4.1,c.37.1.11	136984,136985
1fx7A	230	79.48	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
3b5mA	205	79.69		
2zfoA	140	80.75		
1tw3A	360	82.82	a.4.5.29,c.66.1.12	107373,107374
1jkoC	52	82.86	a.4.1.2	66809
1rp3A	239	84.63	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2z99A	219	85.09		
1k20A	310	85.77	c.107.1.1	68027
3c24A	286	86.13		
1etxA	98	86.47	a.4.1.12	18978
1z67A	135	87.93	a.259.1.1	124507
2vl6A	268	88.16		
2fyxA	143	88.25	d.58.57.1	134411
2oq2A	261	88.35		
1gbsA	185	88.96	d.2.1.5	36986