# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3099	a.248.1.1	133507
1u3eM	174	13.41	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	16.32	b.34.3.1,c.37.1.9	120688,120689
1tikA	213	16.53	c.23.5.3	107003
1f0nA	285	16.82	c.69.1.3	34636
2akaA	776	17.33		
1s69A	124	18.97	a.1.1.1	105305
1d0yA	761	19.34	b.34.3.1,c.37.1.9	24581,32178
1idrA	136	19.69	a.1.1.1	62301
1y6uA	70	19.83		
2bkhA	814	20.71		
1r9lA	309	22.08	c.94.1.1	97262
2ouwA	138	30.90		
1dlwA	116	32.23	a.1.1.1	14982
1mvwA	840	32.39	i.15.1.1	79523
2gwfB	134	34.06		
3c8yA	574	40.42		
2ofyA	86	41.45		
1aorA	605	43.81	a.110.1.1,d.152.1.1	19042,41794
1w9iA	770	47.84		
1jpyA	137	49.64	g.17.1.6	67065
2d2mA	140	51.25		
1gbsA	185	53.20	d.2.1.5	36986
2nxoA	291	53.76		
2b5aA	77	59.88	a.35.1.3	127882
2cfmA	561	62.10		
2v26A	784	62.65		
1vflA	356	63.28	c.1.9.1	120041
1gbs	185	63.99		
2aa1A	144	69.20	a.1.1.2	126463
2amxA	376	70.43	c.1.9.1	127024
1lvk	762	71.12		
1fx7A	230	72.19	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1yhuB	144	72.21		
2qnuA	226	72.79		
2qisA	374	73.02		
2f6mA	65	75.20	a.2.17.1	133051
2ezhA	75	76.53	a.4.1.2	16029
2d5rB	116	77.80		
1vehA	92	79.20	d.52.8.1	113635
1a4mA	349	83.43	c.1.9.1	29014
1gyzA	60	87.97	a.144.2.1	70793