# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3495	a.248.1.1	133507
1w7jA	795	10.40	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	12.10	d.4.1.3,d.285.1.1	107640,107641
2akaA	776	12.79		
2bkhA	814	13.38		
1f0nA	285	14.35	c.69.1.3	34636
1d0yA	761	15.38	b.34.3.1,c.37.1.9	24581,32178
1tikA	213	17.04	c.23.5.3	107003
1y6uA	70	19.98		
1mvwA	840	20.07	i.15.1.1	79523
3c8yA	574	22.44		
1s69A	124	24.32	a.1.1.1	105305
1cc8A	73	28.63	d.58.17.1	39343
1w9iA	770	36.80		
1idrA	136	39.19	a.1.1.1	62301
2ofyA	86	43.04		
1r9lA	309	43.41	c.94.1.1	97262
2v26A	784	46.49		
2ouwA	138	46.90		
2gwfB	134	47.02		
1vehA	92	49.14	d.52.8.1	113635
2d5rB	116	51.09		
1lvk	762	54.68		
1gyzA	60	56.42	a.144.2.1	70793
1dlwA	116	56.85	a.1.1.1	14982
1jpyA	137	57.45	g.17.1.6	67065
1y75B	118	57.77		
1aorA	605	58.92	a.110.1.1,d.152.1.1	19042,41794
1gbsA	185	59.77	d.2.1.5	36986
2qnuA	226	60.28		
1gbs	185	62.21		
2aa1A	144	63.13	a.1.1.2	126463
1yhuB	144	64.42		
2d2mA	140	69.87		
2ezhA	75	71.77	a.4.1.2	16029
1ae7A	119	71.87	a.133.1.2	19553
2gdjA	264	72.79	c.37.1.11	135018
2cfmA	561	74.30		
2b5aA	77	79.33	a.35.1.3	127882
2qisA	374	81.80		
2j01U	118	88.68		
1eca	136	89.65