# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3168	a.248.1.1	133507
1w7jA	795	12.98	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	13.29	d.4.1.3,d.285.1.1	107640,107641
2akaA	776	14.61		
1tikA	213	14.73	c.23.5.3	107003
2bkhA	814	14.86		
1d0yA	761	16.78	b.34.3.1,c.37.1.9	24581,32178
1f0nA	285	22.72	c.69.1.3	34636
1y6uA	70	22.75		
1s69A	124	23.90	a.1.1.1	105305
3c8yA	574	24.54		
2gwfB	134	28.90		
1mvwA	840	30.08	i.15.1.1	79523
1idrA	136	32.90	a.1.1.1	62301
1r9lA	309	37.54	c.94.1.1	97262
1w9iA	770	41.27		
1dlwA	116	42.37	a.1.1.1	14982
2ofyA	86	47.30		
2d2mA	140	49.02		
1y75B	118	50.47		
1ae7A	119	52.07	a.133.1.2	19553
2ouwA	138	53.07		
2v26A	784	56.05		
1jpyA	137	57.36	g.17.1.6	67065
2aa1A	144	57.99	a.1.1.2	126463
2gdjA	264	60.07	c.37.1.11	135018
2qnuA	226	61.03		
1gbsA	185	61.42	d.2.1.5	36986
1lvk	762	62.45		
1yhuB	144	63.22		
1gbs	185	66.55		
1aorA	605	69.16	a.110.1.1,d.152.1.1	19042,41794
2d5rB	116	69.84		
1vehA	92	69.88	d.52.8.1	113635
2fjrA	189	72.98		
2nxoA	291	77.74		
2al3A	90	79.38	d.15.1.2	126957
2ezhA	75	80.03	a.4.1.2	16029
2h8fA	143	81.68	a.1.1.2	136239
1eca	136	82.60		
2f6mA	65	83.51	a.2.17.1	133051
2cfmA	561	83.55		
1gyzA	60	83.82	a.144.2.1	70793
2fzpA	144	85.42		
2ogbA	126	85.43		
2qisA	374	88.76