# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.03453	a.248.1.1	133507
1w7jA	795	7.553	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	10.22		
2akaA	776	13.98		
2j01U	118	14.65		
1y6uA	70	14.83		
2gdjA	264	15.90	c.37.1.11	135018
1u3eM	174	17.56	d.4.1.3,d.285.1.1	107640,107641
1d0yA	761	20.53	b.34.3.1,c.37.1.9	24581,32178
1w9iA	770	20.82		
1mvwA	840	27.52	i.15.1.1	79523
2dlxA	153	32.00		
2i1qA	322	32.23	a.60.4.1,c.37.1.11	136984,136985
2ofyA	86	33.22		
2qnuA	226	33.78		
2qwvA	208	34.43		
1cc8A	73	39.44	d.58.17.1	39343
2v26A	784	39.91		
1e0gA	48	43.59	d.7.1.1	37325
2d5rB	116	46.25		
1etxA	98	49.50	a.4.1.12	18978
2dklA	85	52.47	a.5.2.1	131555
3c8yA	574	57.24		
1zupA	315	57.79	c.55.3.11	125681
2z15A	130	61.41		
2cvhA	220	62.91		
1y75B	118	63.78		
2d2mA	140	65.83		
2nxoA	291	66.11		
1lvk	762	66.32		
1gyzA	60	66.36	a.144.2.1	70793
1s6lA	212	68.38		
1fnc	314	68.58		
1jb9A	316	71.87	b.43.4.2,c.25.1.1	62840,62841
1dlwA	116	73.24	a.1.1.1	14982
1s69A	124	75.37	a.1.1.1	105305
1idrA	136	77.35	a.1.1.1	62301
1yhuB	144	82.49		
2al3A	90	82.93	d.15.1.2	126957
1oohA	126	84.57	a.39.2.1	93383
2ghjA	118	85.62		
2d2mB	142	85.97		
1aorA	605	86.18	a.110.1.1,d.152.1.1	19042,41794
2d0iA	333	89.75		
1fx7A	230	89.85	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090