# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3477	a.248.1.1	133507
2bkhA	814	9.197		
2akaA	776	11.10		
1w7jA	795	12.52	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	17.01	d.4.1.3,d.285.1.1	107640,107641
1d0yA	761	17.08	b.34.3.1,c.37.1.9	24581,32178
2d5rB	116	20.46		
1w9iA	770	24.28		
2v26A	784	26.00		
1r9lA	309	29.27	c.94.1.1	97262
3c8yA	574	31.04		
1mvwA	840	33.87	i.15.1.1	79523
2ofyA	86	34.99		
1y6uA	70	38.08		
1s69A	124	38.98	a.1.1.1	105305
2gwfB	134	39.41		
1f0nA	285	41.68	c.69.1.3	34636
2d2mA	140	43.63		
2ouwA	138	44.46		
1lvk	762	45.48		
1yhuB	144	46.15		
2gdjA	264	47.09	c.37.1.11	135018
2z15A	130	50.25		
2al3A	90	54.00	d.15.1.2	126957
1y75B	118	63.58		
1idrA	136	66.26	a.1.1.1	62301
2cfmA	561	72.22		
1dlwA	116	72.59	a.1.1.1	14982
2f6mA	65	73.34	a.2.17.1	133051
2nxoA	291	78.04		
2qisA	374	82.37		
1ae7A	119	83.51	a.133.1.2	19553
2fzpA	144	83.58		
1jpyA	137	83.63	g.17.1.6	67065
2b5aA	77	86.29	a.35.1.3	127882
1aorA	605	86.84	a.110.1.1,d.152.1.1	19042,41794
1tikA	213	86.87	c.23.5.3	107003
2ogbA	126	89.22		
3b5mA	205	89.30