# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3286	a.248.1.1	133507
2bkhA	814	9.345		
2akaA	776	10.79		
1w7jA	795	11.53	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	14.76	d.4.1.3,d.285.1.1	107640,107641
1d0yA	761	15.99	b.34.3.1,c.37.1.9	24581,32178
1r9lA	309	22.29	c.94.1.1	97262
1w9iA	770	23.36		
3c8yA	574	25.58		
1y6uA	70	25.73		
2v26A	784	28.68		
1mvwA	840	29.56	i.15.1.1	79523
1s69A	124	31.97	a.1.1.1	105305
1y75B	118	40.14		
2gdjA	264	41.50	c.37.1.11	135018
1f0nA	285	41.56	c.69.1.3	34636
2gwfB	134	42.64		
1lvk	762	43.24		
2ofyA	86	43.28		
1ae7A	119	47.39	a.133.1.2	19553
2d5rB	116	48.18		
2d2mA	140	49.56		
2ouwA	138	54.31		
2al3A	90	54.55	d.15.1.2	126957
1yhuB	144	56.74		
1idrA	136	61.82	a.1.1.1	62301
1tikA	213	73.83	c.23.5.3	107003
1dlwA	116	73.99	a.1.1.1	14982
2nxoA	291	75.39		
2z15A	130	77.42		
2cfmA	561	79.57		
3b5mA	205	82.75		
2f6mA	65	83.70	a.2.17.1	133051
1mp9A	198	84.15	d.129.1.1,d.129.1.1	91385,91386
1gyzA	60	84.61	a.144.2.1	70793
1n1bA	549	87.18	a.102.4.1,a.128.1.3	79799,79800
1aocA	175	88.17	g.17.1.5	44817
2fzpA	144	88.89