# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2867	a.248.1.1	133507
1f0nA	285	8.453	c.69.1.3	34636
1w7jA	795	11.79	b.34.3.1,c.37.1.9	120688,120689
2akaA	776	12.15		
1mvwA	840	13.45	i.15.1.1	79523
1y6uA	70	14.50		
1d0yA	761	15.00	b.34.3.1,c.37.1.9	24581,32178
1u3eM	174	15.17	d.4.1.3,d.285.1.1	107640,107641
2gwfB	134	15.38		
2bkhA	814	16.17		
1y75B	118	17.87		
3c8yA	574	19.15		
2d2mA	140	22.56		
1ae7A	119	23.75	a.133.1.2	19553
1w9iA	770	26.13		
1r9lA	309	27.96	c.94.1.1	97262
1yhuB	144	29.38		
1s69A	124	29.55	a.1.1.1	105305
1tikA	213	29.58	c.23.5.3	107003
2ogbA	126	35.71		
2nxoA	291	37.18		
2fzpA	144	40.77		
2ouwA	138	43.92		
1idrA	136	54.13	a.1.1.1	62301
1vehA	92	54.40	d.52.8.1	113635
2al3A	90	54.48	d.15.1.2	126957
1dlwA	116	57.34	a.1.1.1	14982
2v26A	784	63.40		
1mp9A	198	65.01	d.129.1.1,d.129.1.1	91385,91386
1xb4A	202	65.18	a.4.5.54,a.4.5.54	121832,121833
1x9fB	145	65.85	a.1.1.2	114984
1lvk	762	66.65		
1kbjA	412	68.13	c.1.4.1	72280
2ofyA	86	70.92		
2aa1A	144	72.32	a.1.1.2	126463
2qnuA	226	73.80		
2nsvA	52	75.06		
1qnaA	200	75.14	d.129.1.1,d.129.1.1	41226,41227
2j01U	118	75.45		
3b5mA	205	75.68		
2fjrA	189	75.87		
1s6lA	212	77.55		
1gyzA	60	78.38	a.144.2.1	70793
2h8fA	143	78.41	a.1.1.2	136239
1ithA	141	80.75	a.1.1.2	15623
1ubkS	267	81.37	e.19.1.1	88423
2gdjA	264	87.83	c.37.1.11	135018