# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1634	a.248.1.1	133507
1w7jA	795	8.765	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	10.99		
2akaA	776	11.31		
1u3eM	174	11.69	d.4.1.3,d.285.1.1	107640,107641
2d2mA	140	15.15		
1d0yA	761	15.19	b.34.3.1,c.37.1.9	24581,32178
1dlwA	116	16.57	a.1.1.1	14982
1y6uA	70	18.15		
1f0nA	285	19.33	c.69.1.3	34636
1mvwA	840	19.51	i.15.1.1	79523
1s69A	124	23.38	a.1.1.1	105305
1y75B	118	23.47		
1idrA	136	23.89	a.1.1.1	62301
1w9iA	770	24.43		
1ae7A	119	25.01	a.133.1.2	19553
2gwfB	134	26.03		
1yhuB	144	27.44		
2ouwA	138	33.70		
3c8yA	574	39.83		
1r9lA	309	40.60	c.94.1.1	97262
2v26A	784	40.64		
2nxoA	291	43.27		
1ithA	141	48.86	a.1.1.2	15623
1eca	136	48.99		
1tikA	213	49.46	c.23.5.3	107003
1aorA	605	49.81	a.110.1.1,d.152.1.1	19042,41794
2gdjA	264	51.87	c.37.1.11	135018
1x9fB	145	52.10	a.1.1.2	114984
1mp9A	198	52.28	d.129.1.1,d.129.1.1	91385,91386
2ogbA	126	52.78		
1lvk	762	54.89		
2fzpA	144	56.82		
2h8fA	143	57.28	a.1.1.2	136239
1xb4A	202	58.19	a.4.5.54,a.4.5.54	121832,121833
1s6lA	212	62.30		
2j01U	118	63.09		
1vehA	92	64.36	d.52.8.1	113635
2al3A	90	64.84	d.15.1.2	126957
1vflA	356	65.01	c.1.9.1	120041
2d2mB	142	66.09		
1jpyA	137	66.17	g.17.1.6	67065
2aa1A	144	67.66	a.1.1.2	126463
1ubkS	267	67.98	e.19.1.1	88423
2zfoA	140	70.61		
1qnaA	200	70.78	d.129.1.1,d.129.1.1	41226,41227
1wuiS	267	74.79	e.19.1.1	121290
2ofyA	86	75.12		
2fjrA	189	76.33		
1e0gA	48	77.23	d.7.1.1	37325
1ecaA	136	81.28	a.1.1.2	15209
1aocA	175	82.00	g.17.1.5	44817
1v4xA	144	83.81	a.1.1.2	108363
1kbjA	412	84.54	c.1.4.1	72280
2zfoB	142	86.62		
2amxA	376	89.06	c.1.9.1	127024
3bomA	142	89.78