# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1110	a.248.1.1	133507
1w7jA	795	7.396	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	7.949		
1u3eM	174	8.049	d.4.1.3,d.285.1.1	107640,107641
2akaA	776	8.221		
1mvwA	840	8.286	i.15.1.1	79523
1d0yA	761	10.83	b.34.3.1,c.37.1.9	24581,32178
1y6uA	70	12.27		
1s69A	124	15.97	a.1.1.1	105305
2d2mA	140	16.58		
1w9iA	770	17.43		
1f0nA	285	21.16	c.69.1.3	34636
1dlwA	116	22.74	a.1.1.1	14982
1idrA	136	25.50	a.1.1.1	62301
1y75B	118	26.25		
1yhuB	144	26.30		
3c8yA	574	26.51		
2v26A	784	28.27		
1tikA	213	29.11	c.23.5.3	107003
2nxoA	291	30.60		
1s6lA	212	31.17		
1r9lA	309	31.81	c.94.1.1	97262
2ouwA	138	33.38		
2gwfB	134	33.88		
2al3A	90	36.50	d.15.1.2	126957
2j01U	118	43.02		
1lvk	762	43.18		
1aorA	605	48.25	a.110.1.1,d.152.1.1	19042,41794
1ae7A	119	48.90	a.133.1.2	19553
2aa1A	144	49.04	a.1.1.2	126463
1gyzA	60	51.17	a.144.2.1	70793
2gdjA	264	52.45	c.37.1.11	135018
1mp9A	198	56.46	d.129.1.1,d.129.1.1	91385,91386
1xb4A	202	60.59	a.4.5.54,a.4.5.54	121832,121833
1wuiS	267	64.65	e.19.1.1	121290
1x9fB	145	65.87	a.1.1.2	114984
1ubkS	267	65.89	e.19.1.1	88423
2ogbA	126	66.64		
3b5mA	205	67.31		
1vehA	92	69.15	d.52.8.1	113635
2fzpA	144	69.24		
2oa4A	101	70.75		
2d2mB	142	72.02		
2h8fA	143	72.42	a.1.1.2	136239
3bomA	142	72.73		
1fx7A	230	73.86	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2zfoA	140	74.91		
1e0gA	48	78.24	d.7.1.1	37325
2amxA	376	78.45	c.1.9.1	127024
2fjrA	189	78.72		
2d5rB	116	79.52		
1v4xA	144	80.80	a.1.1.2	108363
1kbjA	412	80.90	c.1.4.1	72280
2ofyA	86	81.15		
2eqpA	50	81.27		
2nsvA	52	87.41		
2qnuA	226	88.02