# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2779	a.248.1.1	133507
1y75B	118	19.79		
3c8yA	574	37.85		
2d5rB	116	38.92		
2gwfB	134	44.04		
1w7jA	795	48.45	b.34.3.1,c.37.1.9	120688,120689
2pytA	133	49.51		
2fzpA	144	51.53		
1u3eM	174	52.07	d.4.1.3,d.285.1.1	107640,107641
1ae7A	119	56.04	a.133.1.2	19553
1aorA	605	58.81	a.110.1.1,d.152.1.1	19042,41794
2j01U	118	66.45		
1aocA	175	68.21	g.17.1.5	44817
2qnuA	226	68.39		
2z15A	130	72.90		
2akaA	776	74.12		
1y6uA	70	74.68		
1mvwA	840	78.24	i.15.1.1	79523
1tikA	213	79.34	c.23.5.3	107003
1r9lA	309	80.54	c.94.1.1	97262
1yzbA	182	81.69		
2ogbA	126	83.16		
2dlxA	153	85.87		
2d2mA	140	88.78