# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1047	a.248.1.1	133507
1mvwA	840	19.16	i.15.1.1	79523
1w7jA	795	21.29	b.34.3.1,c.37.1.9	120688,120689
1y6uA	70	21.65		
3c8yA	574	23.60		
1y75B	118	24.63		
1ae7A	119	29.87	a.133.1.2	19553
2nxoA	291	30.50		
1u3eM	174	34.24	d.4.1.3,d.285.1.1	107640,107641
1f0nA	285	38.03	c.69.1.3	34636
2fjrA	189	42.51		
2akaA	776	44.94		
2qrvA	295	49.50		
2gdjA	264	52.62	c.37.1.11	135018
2amxA	376	53.71	c.1.9.1	127024
1aorA	605	53.89	a.110.1.1,d.152.1.1	19042,41794
1dlwA	116	53.97	a.1.1.1	14982
2dlxA	153	54.73		
1vflA	356	56.52	c.1.9.1	120041
1s69A	124	57.60	a.1.1.1	105305
1h2eA	207	57.77	c.60.1.1	70857
1a2aA	122	59.99	a.133.1.2	19540
1s6lA	212	60.92		
2v9cA	215	61.36		
1ypyA	184	62.18		
1a4mA	349	62.58	c.1.9.1	29014
1vapA	123	62.69	a.133.1.2	19548
2qnuA	226	62.97		
1d0yA	761	63.62	b.34.3.1,c.37.1.9	24581,32178
1kbjA	412	67.29	c.1.4.1	72280
1idrA	136	69.18	a.1.1.1	62301
1r9lA	309	69.85	c.94.1.1	97262
2bkhA	814	70.10		
1tikA	213	70.98	c.23.5.3	107003
2ib0A	170	71.49		
2qebA	145	72.61		
2fzpA	144	73.85		
2hc1A	291	76.25		
1gyzA	60	80.45	a.144.2.1	70793
1smdA	496	82.23	b.71.1.1,c.1.8.1	27768,28755
2gwfB	134	83.72		
1jpyA	137	85.37	g.17.1.6	67065
1yzbA	182	86.01		
1w9iA	770	87.00