# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 7.93e-05 a.248.1.1 133507 2dklA 85 0.4691 a.5.2.1 131555 2ooaA 52 0.5345 1jb9A 316 1.133 b.43.4.2,c.25.1.1 62840,62841 2qnuA 226 3.978 1fnc 314 4.151 1etxA 98 6.047 a.4.1.12 18978 1wr1B 58 6.564 a.5.2.1 121185 2bwbA 46 6.584 a.5.2.1 129329 1zupA 315 6.642 c.55.3.11 125681 2b5oA 402 7.157 2j01U 118 7.464 2in3A 216 7.721 1ifyA 49 8.424 a.5.2.1 71207 2ofyA 86 10.61 2ezhA 75 11.35 a.4.1.2 16029 2bkhA 814 11.71 1ogiA 303 11.75 b.43.4.2,c.25.1.1 92914,92915 2rc5A 314 11.85 1bx1A 314 12.20 b.43.4.2,c.25.1.1 25629,31519 1vejA 74 14.69 a.5.2.1 120020 2qsfX 171 15.23 1z96A 40 16.69 1k20A 310 17.36 c.107.1.1 68027 1fipA 98 19.21 a.4.1.12 18980 2eggA 297 19.28 3c9pA 123 20.65 2oo9A 46 20.87 1a8o 70 21.30 2g0wA 296 21.58 c.1.15.4 134503 2i57A 438 22.66 1fs7A 485 23.10 a.138.1.3 19691 1a8oA 70 23.20 a.28.3.1 16953 1k6kA 143 23.36 a.174.1.1 77274 1ccwA 137 23.39 c.23.6.1 31238 1eudB 396 23.56 c.23.4.1,d.142.1.4 31150,41571 1v38A 78 23.59 a.60.1.2 100280 1y6uA 70 23.61 2qezA 455 25.09 1vekA 84 25.75 a.5.2.1 113636 1zp4A 304 26.31 2v26A 784 27.01 1jr2A 286 27.61 c.113.1.1 67111 1vg5A 73 27.61 a.5.2.1 113640 1pbjA 125 27.92 d.37.1.1,d.37.1.1 94414,94415 1rxdA 159 28.63 c.45.1.1 111959 1zelA 298 28.95 1gx1A 160 29.87 d.79.5.1 70675 1p90A 145 30.39 c.55.5.2 94377 2b5aA 77 30.60 a.35.1.3 127882 2r0bA 154 31.88 2o1sA 621 32.78 2qtsA 438 32.90 2cp8A 54 33.70 a.5.2.1 130695 1b0xA 94 35.00 a.60.1.2 17933 1x24A 180 35.26 3bnjA 485 35.42 1dxsA 80 35.69 a.60.1.2 17944 1s6lA 212 36.32 1w34A 304 40.74 b.43.4.2,c.25.1.1 120620,120621 1ixsA 62 44.52 a.5.1.1 76932 1g5tA 196 44.97 c.37.1.11 32366 1u3eM 174 45.81 d.4.1.3,d.285.1.1 107640,107641 1m7sA 484 47.07 e.5.1.1 74574 1jqlB 140 47.61 c.37.1.20 63234 1m5yA 408 48.91 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1zckA 154 49.25 1dv0A 47 50.05 a.5.2.1 16289 1w9iA 770 50.97 2rdzA 452 51.34 1iugA 352 54.23 c.67.1.3 90699 1ig0A 319 54.31 b.82.6.1,c.100.1.1 62354,62355 1q02A 52 54.97 a.5.2.1 95490 2ppxA 99 55.27 2qhoB 53 57.08 1qjcA 158 57.25 c.26.1.3 63328 1zkpA 268 58.60 d.157.1.9 125205 1e0gA 48 61.10 d.7.1.1 37325 2h5nA 133 61.52 1xcbA 211 62.30 a.4.5.38,c.2.1.12 109552,109553 1fndA 314 62.86 b.43.4.2,c.25.1.1 25626,31516 1cvrA 435 63.59 b.1.18.12,c.17.1.2 21949,31006 2jgqA 233 64.45 2f3nA 76 66.12 a.60.1.2 132885 2d9sA 53 69.07 1n0qA 93 69.23 k.37.1.1 79754 1vdlA 80 69.39 a.5.2.1 108528 2pf5A 98 69.53 1aihA 170 70.19 d.163.1.1 42149 1d0yA 761 70.27 b.34.3.1,c.37.1.9 24581,32178 2hdoA 209 71.70 c.108.1.6 136345 1e3jA 352 71.90 b.35.1.2,c.2.1.1 24765,29781 1i1qB 192 72.11 c.23.16.1 61544 1m3qA 317 72.14 a.96.1.3,d.129.1.2 91184,91185 1u9lA 70 73.44 a.60.4.2 107751 2yxyA 115 73.80 2nwlA 422 74.21 3be4A 217 74.46 1wehA 171 74.47 c.129.1.1 114551 1b4fA 82 75.78 a.60.1.2 17934 2yrxA 451 75.91 2pd2A 108 76.00 1e8cA 498 76.40 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1bouA 139 76.70 a.88.1.1 18521 2jabA 136 76.98 1ig3A 263 77.29 b.82.6.1,c.100.1.1 62358,62359 2bl0B 145 78.54 1go2A 304 78.54 b.43.4.2,c.25.1.1 76243,76244 1y02A 120 79.22 a.140.2.1,g.50.1.1 116278,116279 1yrvA 169 79.28 d.20.1.1 123941 2cobA 70 81.26 a.4.1.15 130673 2jhnA 295 81.88 1wi9A 72 82.27 a.4.5.47 114663 2rfmA 192 83.56 3cswA 285 85.58 1uc8A 280 85.95 c.30.1.6,d.142.1.7 99165,99166 1r9lA 309 87.96 c.94.1.1 97262 1m32A 366 88.12 c.67.1.3 78508 2r7aA 256 88.35 2al3A 90 89.05 d.15.1.2 126957 1pxvA 183 89.18 d.3.1.1 95301 1vj0A 380 89.31 b.35.1.2,c.2.1.1 100786,100787 2z15A 130 89.82