This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA T A 3 3 NATAA Q A 4 4 NATAA K A 5 5 NATAA F A 6 6 NATAA T A 7 7 NATAA K A 8 8 NATAA D A 9 9 NATAA M A 10 10 NATAA T A 11 11 NATAA F A 12 12 NATAA A A 13 13 NATAA Q A 14 14 NATAA A A 15 15 NATAA L A 16 16 NATAA Q A 17 17 NATAA T A 18 18 NATAA H A 19 19 NATRO P A 20 20 NATAA G A 21 21 NATAA V A 22 22 NATAA A A 23 23 NATAA G A 24 24 NATAA V A 25 25 NATAA L A 26 26 NATAA R A 27 27 NATAA S A 28 28 NATAA Y A 29 29 NATAA N A 30 30 NATAA L A 31 31 NATAA G A 32 32 NATRO C A 33 33 NATAA I A 34 34 NATAA G A 35 35 NATRO C A 36 36 NATAA M A 37 37 NATAA G A 38 38 NATAA A A 39 39 NATAA Q A 40 40 NATAA N A 41 41 NATAA E A 42 42 NATAA S A 43 43 NATAA L A 44 44 NATAA E A 45 45 NATAA Q A 46 46 NATAA G A 47 47 NATAA A A 48 48 NATAA N A 49 49 NATAA A A 50 50 NATAA H A 51 51 NATAA G A 52 52 NATAA L A 53 53 NATAA N A 54 54 NATAA V A 55 55 NATAA E A 56 56 NATAA D A 57 57 NATAA I A 58 58 NATAA L A 59 59 NATAA R A 60 60 NATAA D A 61 61 NATAA L A 62 62 NATAA N A 63 63 NATAA A A 64 64 NATAA L A 65 65 NATAA A