PFRMAT RR TARGET T0469 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MTQKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAH GLNVEDILRDLNALA 4 14 0 8 0.358646 4 32 0 8 0.456047 4 33 0 8 0.453191 4 34 0 8 0.423899 4 35 0 8 0.435109 4 36 0 8 0.393728 4 37 0 8 0.378928 5 14 0 8 0.850509 5 15 0 8 0.683736 5 16 0 8 0.388238 5 17 0 8 0.549051 5 18 0 8 0.668639 5 19 0 8 0.372358 5 20 0 8 0.38684 5 21 0 8 0.681445 5 22 0 8 0.715543 5 23 0 8 0.470096 5 24 0 8 0.777628 5 25 0 8 0.705067 5 26 0 8 0.457007 5 27 0 8 0.450471 5 28 0 8 0.610464 5 30 0 8 0.549632 5 31 0 8 0.390258 5 32 0 8 0.646321 5 33 0 8 0.613514 5 34 0 8 0.529641 5 35 0 8 0.634918 5 36 0 8 0.54605 5 37 0 8 0.549274 5 38 0 8 0.555213 5 39 0 8 0.442554 5 40 0 8 0.545695 5 41 0 8 0.567396 5 42 0 8 0.419091 5 43 0 8 0.720776 5 44 0 8 0.374574 5 45 0 8 0.543929 5 46 0 8 0.675139 5 47 0 8 0.525941 5 49 0 8 0.543147 5 50 0 8 0.442856 5 52 0 8 0.42421 5 54 0 8 0.470308 5 57 0 8 0.685216 5 58 0 8 0.490281 5 60 0 8 0.49575 5 61 0 8 0.613369 6 18 0 8 0.414057 6 21 0 8 0.461215 6 22 0 8 0.445467 6 24 0 8 0.44936 6 30 0 8 0.381654 6 32 0 8 0.493723 6 33 0 8 0.494119 6 34 0 8 0.470672 6 35 0 8 0.488806 6 36 0 8 0.449769 6 37 0 8 0.451986 6 38 0 8 0.398678 6 40 0 8 0.390253 7 17 0 8 0.447133 7 18 0 8 0.522878 7 20 0 8 0.382455 7 21 0 8 0.551787 7 22 0 8 0.562088 7 23 0 8 0.379362 7 24 0 8 0.615994 7 25 0 8 0.401982 7 28 0 8 0.48323 7 30 0 8 0.428311 7 31 0 8 0.364152 7 32 0 8 0.532872 7 33 0 8 0.526075 7 34 0 8 0.500555 7 35 0 8 0.538448 7 36 0 8 0.494888 7 37 0 8 0.504359 7 38 0 8 0.471788 7 39 0 8 0.407071 7 40 0 8 0.475524 7 41 0 8 0.459902 7 43 0 8 0.533538 7 45 0 8 0.429767 7 46 0 8 0.459662 7 49 0 8 0.429116 7 50 0 8 0.379314 7 54 0 8 0.365829 7 57 0 8 0.409564 7 60 0 8 0.372076 7 61 0 8 0.414505 8 21 0 8 0.419371 8 22 0 8 0.372296 8 24 0 8 0.385992 8 32 0 8 0.438063 8 33 0 8 0.44598 8 34 0 8 0.432214 8 35 0 8 0.466647 8 36 0 8 0.433142 8 37 0 8 0.437912 8 38 0 8 0.392302 8 40 0 8 0.368885 9 18 0 8 0.46781 9 21 0 8 0.563162 9 22 0 8 0.542047 9 24 0 8 0.621177 9 25 0 8 0.441874 9 28 0 8 0.380486 9 32 0 8 0.507272 9 33 0 8 0.491292 9 34 0 8 0.453519 9 35 0 8 0.536033 9 36 0 8 0.471951 9 37 0 8 0.486683 9 38 0 8 0.467423 9 39 0 8 0.368642 9 40 0 8 0.446439 9 41 0 8 0.427764 9 43 0 8 0.541055 9 45 0 8 0.364084 9 46 0 8 0.486235 9 57 0 8 0.518035 9 61 0 8 0.368747 10 21 0 8 0.483434 10 22 0 8 0.424208 10 24 0 8 0.468656 10 32 0 8 0.468786 10 33 0 8 0.470753 10 34 0 8 0.447679 10 35 0 8 0.507346 10 36 0 8 0.460071 10 37 0 8 0.468661 10 38 0 8 0.431375 10 40 0 8 0.392391 10 43 0 8 0.372453 11 20 0 8 0.401654 11 21 0 8 0.788297 11 22 0 8 0.775633 11 23 0 8 0.470358 11 24 0 8 0.849733 11 25 0 8 0.801868 11 26 0 8 0.39799 11 27 0 8 0.362573 11 28 0 8 0.620609 11 30 0 8 0.533193 11 32 0 8 0.701723 11 33 0 8 0.653442 11 34 0 8 0.553247 11 35 0 8 0.730384 11 36 0 8 0.617357 11 37 0 8 0.642682 11 38 0 8 0.657078 11 39 0 8 0.473253 11 40 0 8 0.621061 11 41 0 8 0.625971 11 42 0 8 0.42881 11 43 0 8 0.785806 11 45 0 8 0.563062 11 46 0 8 0.798261 11 47 0 8 0.618376 11 49 0 8 0.499768 11 50 0 8 0.489183 11 52 0 8 0.419029 11 54 0 8 0.534334 11 56 0 8 0.3865 11 57 0 8 0.819938 11 58 0 8 0.553004 11 60 0 8 0.448221 11 61 0 8 0.646465 12 21 0 8 0.769025 12 22 0 8 0.753893 12 23 0 8 0.5041 12 24 0 8 0.819308 12 25 0 8 0.658252 12 26 0 8 0.408334 12 27 0 8 0.431342 12 28 0 8 0.650779 12 29 0 8 0.361106 12 30 0 8 0.539918 12 31 0 8 0.374897 12 32 0 8 0.645214 12 33 0 8 0.594524 12 34 0 8 0.541198 12 35 0 8 0.64333 12 36 0 8 0.55686 12 37 0 8 0.592518 12 38 0 8 0.597358 12 39 0 8 0.477428 12 40 0 8 0.603849 12 41 0 8 0.603186 12 42 0 8 0.444576 12 43 0 8 0.740725 12 44 0 8 0.380601 12 45 0 8 0.570704 12 46 0 8 0.680334 12 47 0 8 0.463364 12 49 0 8 0.532521 12 50 0 8 0.529002 12 52 0 8 0.42813 12 54 0 8 0.519966 12 56 0 8 0.395693 12 57 0 8 0.693584 12 58 0 8 0.510412 12 60 0 8 0.470952 12 61 0 8 0.56455 13 22 0 8 0.406454 13 24 0 8 0.47216 13 32 0 8 0.401044 13 33 0 8 0.37461 13 35 0 8 0.40539 13 37 0 8 0.362984 13 43 0 8 0.37857 13 46 0 8 0.366901 14 24 0 8 0.770625 14 25 0 8 0.76125 14 28 0 8 0.52204 14 30 0 8 0.432165 14 32 0 8 0.576114 14 33 0 8 0.487596 14 35 0 8 0.58597 14 36 0 8 0.44211 14 37 0 8 0.46523 14 38 0 8 0.494757 14 40 0 8 0.452236 14 41 0 8 0.489287 14 43 0 8 0.702381 14 45 0 8 0.447922 14 46 0 8 0.755839 14 47 0 8 0.59896 14 49 0 8 0.395952 14 50 0 8 0.43533 14 54 0 8 0.488899 14 57 0 8 0.759528 14 58 0 8 0.491682 14 60 0 8 0.385382 14 61 0 8 0.608894 15 24 0 8 0.887743 15 25 0 8 0.869456 15 26 0 8 0.551585 15 27 0 8 0.51022 15 28 0 8 0.783855 15 29 0 8 0.44143 15 30 0 8 0.746188 15 31 0 8 0.373328 15 32 0 8 0.792424 15 33 0 8 0.681425 15 34 0 8 0.51653 15 35 0 8 0.756265 15 36 0 8 0.599079 15 37 0 8 0.641881 15 38 0 8 0.682042 15 39 0 8 0.471922 15 40 0 8 0.670729 15 41 0 8 0.699586 15 42 0 8 0.465064 15 43 0 8 0.81286 15 44 0 8 0.395747 15 45 0 8 0.606687 15 46 0 8 0.818342 15 47 0 8 0.715121 15 49 0 8 0.585688 15 50 0 8 0.67494 15 52 0 8 0.578295 15 54 0 8 0.608115 15 57 0 8 0.760129 15 58 0 8 0.584562 15 60 0 8 0.484862 15 61 0 8 0.767028 16 25 0 8 0.448998 16 27 0 8 0.376757 16 28 0 8 0.614543 16 30 0 8 0.542935 16 32 0 8 0.577576 16 33 0 8 0.472153 16 34 0 8 0.415935 16 35 0 8 0.504845 16 36 0 8 0.408947 16 37 0 8 0.442406 16 38 0 8 0.437085 16 40 0 8 0.453303 16 41 0 8 0.458278 16 43 0 8 0.560174 16 45 0 8 0.405712 16 46 0 8 0.453365 16 49 0 8 0.437666 16 50 0 8 0.512495 16 52 0 8 0.376507 16 54 0 8 0.408441 16 57 0 8 0.37137 16 61 0 8 0.453323 17 28 0 8 0.388386 17 32 0 8 0.425003 17 33 0 8 0.371247 17 35 0 8 0.408969 17 37 0 8 0.364089 17 41 0 8 0.361398 17 43 0 8 0.481191 17 46 0 8 0.412135 17 54 0 8 0.372436 17 57 0 8 0.382622 18 28 0 8 0.486528 18 30 0 8 0.409406 18 32 0 8 0.506974 18 33 0 8 0.430348 18 34 0 8 0.359196 18 35 0 8 0.491343 18 36 0 8 0.391936 18 37 0 8 0.421346 18 38 0 8 0.435508 18 40 0 8 0.435352 18 41 0 8 0.456604 18 43 0 8 0.619549 18 45 0 8 0.424964 18 46 0 8 0.544092 18 47 0 8 0.365609 18 49 0 8 0.36987 18 50 0 8 0.371425 18 54 0 8 0.468283 18 57 0 8 0.555245 18 58 0 8 0.398936 18 60 0 8 0.371888 18 61 0 8 0.451576 19 28 0 8 0.386507 19 32 0 8 0.433889 19 33 0 8 0.38445 19 34 0 8 0.361038 19 35 0 8 0.414061 19 36 0 8 0.359586 19 37 0 8 0.37869 19 40 0 8 0.359927 19 43 0 8 0.408823 21 32 0 8 0.49703 21 33 0 8 0.45336 21 34 0 8 0.401373 21 35 0 8 0.504978 21 36 0 8 0.424176 21 37 0 8 0.44053 21 38 0 8 0.434989 21 40 0 8 0.405821 21 41 0 8 0.404367 21 43 0 8 0.560078 21 45 0 8 0.379994 21 46 0 8 0.524143 21 54 0 8 0.399387 21 57 0 8 0.546886 21 61 0 8 0.398128 22 31 0 8 0.376089 22 32 0 8 0.711321 22 33 0 8 0.63254 22 34 0 8 0.537275 22 35 0 8 0.692262 22 36 0 8 0.574104 22 37 0 8 0.611771 22 38 0 8 0.638206 22 39 0 8 0.48379 22 40 0 8 0.63155 22 41 0 8 0.646458 22 42 0 8 0.457494 22 43 0 8 0.783342 22 44 0 8 0.402542 22 45 0 8 0.591975 22 46 0 8 0.719215 22 47 0 8 0.536729 22 49 0 8 0.520515 22 50 0 8 0.524952 22 52 0 8 0.463564 22 54 0 8 0.604797 22 56 0 8 0.410593 22 57 0 8 0.742895 22 58 0 8 0.551796 22 60 0 8 0.497096 22 61 0 8 0.602953 23 32 0 8 0.439551 23 33 0 8 0.393279 23 34 0 8 0.357858 23 35 0 8 0.422872 23 36 0 8 0.36077 23 37 0 8 0.371091 23 43 0 8 0.384349 24 33 0 8 0.495557 24 34 0 8 0.388692 24 35 0 8 0.568166 24 36 0 8 0.437093 24 37 0 8 0.461301 24 38 0 8 0.483081 24 40 0 8 0.450034 24 41 0 8 0.477269 24 43 0 8 0.677099 24 45 0 8 0.456599 24 46 0 8 0.68361 24 47 0 8 0.499775 24 49 0 8 0.403255 24 50 0 8 0.428636 24 54 0 8 0.502559 24 57 0 8 0.69984 24 58 0 8 0.462425 24 60 0 8 0.399443 24 61 0 8 0.542444 25 34 0 8 0.565315 25 35 0 8 0.791471 25 36 0 8 0.645432 25 37 0 8 0.667138 25 38 0 8 0.693626 25 39 0 8 0.461918 25 40 0 8 0.644205 25 41 0 8 0.6712 25 42 0 8 0.43262 25 43 0 8 0.821357 25 44 0 8 0.372436 25 45 0 8 0.583618 25 46 0 8 0.841096 25 47 0 8 0.731266 25 49 0 8 0.521319 25 50 0 8 0.578605 25 52 0 8 0.504791 25 54 0 8 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