PFRMAT RR TARGET T0469 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MTQKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAH GLNVEDILRDLNALA 4 14 0 8 0.0218464 4 32 0 8 0.0510942 4 33 0 8 0.0318635 4 34 0 8 0.0304493 4 35 0 8 0.0417284 4 36 0 8 0.028551 4 37 0 8 0.0338235 5 14 0 8 0.261712 5 15 0 8 0.0504321 5 16 0 8 0.0146268 5 17 0 8 0.0171577 5 18 0 8 0.0387595 5 19 0 8 0.0349043 5 20 0 8 0.0257718 5 21 0 8 0.0796508 5 22 0 8 0.0661587 5 23 0 8 0.0332373 5 24 0 8 0.110049 5 25 0 8 0.0775975 5 26 0 8 0.0252567 5 27 0 8 0.0165345 5 28 0 8 0.0660929 5 30 0 8 0.0709343 5 31 0 8 0.0592666 5 32 0 8 0.167442 5 33 0 8 0.104845 5 34 0 8 0.0687095 5 35 0 8 0.148138 5 36 0 8 0.0583404 5 37 0 8 0.0612018 5 38 0 8 0.0478106 5 39 0 8 0.0432448 5 40 0 8 0.0474721 5 41 0 8 0.0590683 5 42 0 8 0.0377661 5 43 0 8 0.117759 5 44 0 8 0.026833 5 45 0 8 0.0252311 5 46 0 8 0.054415 5 47 0 8 0.0416245 5 49 0 8 0.0312443 5 50 0 8 0.0998121 5 52 0 8 0.0717396 5 54 0 8 0.0506689 5 57 0 8 0.126238 5 58 0 8 0.0295952 5 60 0 8 0.0281716 5 61 0 8 0.0675656 6 18 0 8 0.0284816 6 21 0 8 0.0339063 6 22 0 8 0.0453017 6 24 0 8 0.0437204 6 30 0 8 0.0307333 6 32 0 8 0.117523 6 33 0 8 0.0865393 6 34 0 8 0.0554497 6 35 0 8 0.098595 6 36 0 8 0.046749 6 37 0 8 0.0633121 6 38 0 8 0.0336275 6 40 0 8 0.0542432 7 17 0 8 0.00948871 7 18 0 8 0.0250121 7 20 0 8 0.0139866 7 21 0 8 0.0306711 7 22 0 8 0.0342335 7 23 0 8 0.0227365 7 24 0 8 0.0316616 7 25 0 8 0.0361313 7 28 0 8 0.0291886 7 30 0 8 0.030564 7 31 0 8 0.0622644 7 32 0 8 0.11701 7 33 0 8 0.0644747 7 34 0 8 0.0516117 7 35 0 8 0.0927762 7 36 0 8 0.046587 7 37 0 8 0.0872674 7 38 0 8 0.0393053 7 39 0 8 0.0531161 7 40 0 8 0.0560871 7 41 0 8 0.137185 7 43 0 8 0.0484878 7 45 0 8 0.0409759 7 46 0 8 0.044193 7 49 0 8 0.0472315 7 50 0 8 0.0987077 7 54 0 8 0.0604445 7 57 0 8 0.0870226 7 60 0 8 0.0212202 7 61 0 8 0.02911 8 21 0 8 0.0256329 8 22 0 8 0.0339437 8 24 0 8 0.027444 8 32 0 8 0.107283 8 33 0 8 0.0514364 8 34 0 8 0.0664616 8 35 0 8 0.0867972 8 36 0 8 0.0456354 8 37 0 8 0.0395102 8 38 0 8 0.0461914 8 40 0 8 0.027622 9 18 0 8 0.0202753 9 21 0 8 0.0267985 9 22 0 8 0.0294358 9 24 0 8 0.0303746 9 25 0 8 0.0337679 9 28 0 8 0.0240024 9 32 0 8 0.107422 9 33 0 8 0.0508202 9 34 0 8 0.0395875 9 35 0 8 0.0836316 9 36 0 8 0.0341381 9 37 0 8 0.038068 9 38 0 8 0.0337514 9 39 0 8 0.0267251 9 40 0 8 0.0292957 9 41 0 8 0.0526406 9 43 0 8 0.075152 9 45 0 8 0.0138515 9 46 0 8 0.0350134 9 57 0 8 0.0837336 9 61 0 8 0.0327268 10 21 0 8 0.0273548 10 22 0 8 0.0248119 10 24 0 8 0.0282454 10 32 0 8 0.0628853 10 33 0 8 0.0372207 10 34 0 8 0.0254057 10 35 0 8 0.0477085 10 36 0 8 0.0245015 10 37 0 8 0.0366942 10 38 0 8 0.0343938 10 40 0 8 0.0246502 10 43 0 8 0.0394017 11 20 0 8 0.0247661 11 21 0 8 0.0678956 11 22 0 8 0.101247 11 23 0 8 0.0571364 11 24 0 8 0.188462 11 25 0 8 0.161562 11 26 0 8 0.0568925 11 27 0 8 0.0134137 11 28 0 8 0.0802117 11 30 0 8 0.0686935 11 32 0 8 0.16998 11 33 0 8 0.13729 11 34 0 8 0.0703899 11 35 0 8 0.152921 11 36 0 8 0.0844186 11 37 0 8 0.109213 11 38 0 8 0.0638082 11 39 0 8 0.0613031 11 40 0 8 0.0852832 11 41 0 8 0.147083 11 42 0 8 0.0547993 11 43 0 8 0.190025 11 45 0 8 0.0468103 11 46 0 8 0.148953 11 47 0 8 0.118906 11 49 0 8 0.0914901 11 50 0 8 0.122511 11 52 0 8 0.0657083 11 54 0 8 0.0870606 11 56 0 8 0.0272198 11 57 0 8 0.183112 11 58 0 8 0.0584644 11 60 0 8 0.0427379 11 61 0 8 0.101602 12 21 0 8 0.0426294 12 22 0 8 0.0392652 12 23 0 8 0.0233837 12 24 0 8 0.0351661 12 25 0 8 0.0480244 12 26 0 8 0.0157939 12 27 0 8 0.0146924 12 28 0 8 0.0377524 12 29 0 8 0.0371503 12 30 0 8 0.0297284 12 31 0 8 0.0352036 12 32 0 8 0.0719954 12 33 0 8 0.0577681 12 34 0 8 0.0319527 12 35 0 8 0.054783 12 36 0 8 0.0646339 12 37 0 8 0.052955 12 38 0 8 0.0400658 12 39 0 8 0.031841 12 40 0 8 0.048925 12 41 0 8 0.0556505 12 42 0 8 0.0274612 12 43 0 8 0.0499392 12 44 0 8 0.0262594 12 45 0 8 0.0245156 12 46 0 8 0.0598116 12 47 0 8 0.0439865 12 49 0 8 0.0371224 12 50 0 8 0.0610094 12 52 0 8 0.022912 12 54 0 8 0.0643801 12 56 0 8 0.0251197 12 57 0 8 0.0648906 12 58 0 8 0.0292146 12 60 0 8 0.0232512 12 61 0 8 0.0370471 13 22 0 8 0.0133877 13 24 0 8 0.0236783 13 32 0 8 0.0316199 13 33 0 8 0.0177082 13 35 0 8 0.0244068 13 37 0 8 0.0173 13 43 0 8 0.0198843 13 46 0 8 0.0197918 14 24 0 8 0.152836 14 25 0 8 0.187049 14 28 0 8 0.0744341 14 30 0 8 0.0529676 14 32 0 8 0.114038 14 33 0 8 0.102251 14 35 0 8 0.101119 14 36 0 8 0.0472777 14 37 0 8 0.0650743 14 38 0 8 0.0461997 14 40 0 8 0.0310353 14 41 0 8 0.0603184 14 43 0 8 0.397434 14 45 0 8 0.0310904 14 46 0 8 0.127003 14 47 0 8 0.0875643 14 49 0 8 0.0351791 14 50 0 8 0.111542 14 54 0 8 0.0617092 14 57 0 8 0.126203 14 58 0 8 0.0598498 14 60 0 8 0.0235955 14 61 0 8 0.112877 15 24 0 8 0.239866 15 25 0 8 0.211076 15 26 0 8 0.0520282 15 27 0 8 0.0193222 15 28 0 8 0.100441 15 29 0 8 0.0679077 15 30 0 8 0.0876231 15 31 0 8 0.0715639 15 32 0 8 0.146993 15 33 0 8 0.168855 15 34 0 8 0.0644614 15 35 0 8 0.129842 15 36 0 8 0.0647192 15 37 0 8 0.0822337 15 38 0 8 0.0641949 15 39 0 8 0.0542308 15 40 0 8 0.0838232 15 41 0 8 0.146284 15 42 0 8 0.0498767 15 43 0 8 0.180597 15 44 0 8 0.063274 15 45 0 8 0.0611972 15 46 0 8 0.173893 15 47 0 8 0.18699 15 49 0 8 0.081546 15 50 0 8 0.134159 15 52 0 8 0.0556048 15 54 0 8 0.0906932 15 57 0 8 0.229155 15 58 0 8 0.0778276 15 60 0 8 0.0483369 15 61 0 8 0.119197 16 25 0 8 0.0199277 16 27 0 8 0.0115614 16 28 0 8 0.0337788 16 30 0 8 0.0229137 16 32 0 8 0.0514228 16 33 0 8 0.0412226 16 34 0 8 0.0262163 16 35 0 8 0.0378736 16 36 0 8 0.0336416 16 37 0 8 0.0441296 16 38 0 8 0.0347417 16 40 0 8 0.0290487 16 41 0 8 0.0270092 16 43 0 8 0.0390106 16 45 0 8 0.0228343 16 46 0 8 0.0455588 16 49 0 8 0.0242353 16 50 0 8 0.0593161 16 52 0 8 0.0186788 16 54 0 8 0.0476192 16 57 0 8 0.0457931 16 61 0 8 0.0330654 17 28 0 8 0.0182395 17 32 0 8 0.0371496 17 33 0 8 0.0300718 17 35 0 8 0.0274789 17 37 0 8 0.0283926 17 41 0 8 0.0193602 17 43 0 8 0.0277187 17 46 0 8 0.0306952 17 54 0 8 0.0341636 17 57 0 8 0.0295567 18 28 0 8 0.0355761 18 30 0 8 0.034027 18 32 0 8 0.0735329 18 33 0 8 0.0720625 18 34 0 8 0.0347474 18 35 0 8 0.0571763 18 36 0 8 0.0683945 18 37 0 8 0.0747544 18 38 0 8 0.0289526 18 40 0 8 0.0676902 18 41 0 8 0.0880595 18 43 0 8 0.057958 18 45 0 8 0.0313574 18 46 0 8 0.169725 18 47 0 8 0.0720369 18 49 0 8 0.0608247 18 50 0 8 0.0769608 18 54 0 8 0.0634314 18 57 0 8 0.0783188 18 58 0 8 0.0211295 18 60 0 8 0.0305438 18 61 0 8 0.0280205 19 28 0 8 0.0205358 19 32 0 8 0.0866143 19 33 0 8 0.0308881 19 34 0 8 0.0316873 19 35 0 8 0.0616542 19 36 0 8 0.0274254 19 37 0 8 0.0245664 19 40 0 8 0.0194302 19 43 0 8 0.0423595 21 32 0 8 0.0640492 21 33 0 8 0.0461235 21 34 0 8 0.0259223 21 35 0 8 0.0477668 21 36 0 8 0.027168 21 37 0 8 0.0347743 21 38 0 8 0.0250734 21 40 0 8 0.0380712 21 41 0 8 0.0313326 21 43 0 8 0.0739839 21 45 0 8 0.0231252 21 46 0 8 0.0412469 21 54 0 8 0.0517888 21 57 0 8 0.0585716 21 61 0 8 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0.0424216 52 61 0 8 0.0194709 END