PFRMAT RR TARGET T0469 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MTQKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAH GLNVEDILRDLNALA 3 12 0 8 0.51161 3 14 0 8 0.492675 3 15 0 8 0.436885 3 17 0 8 0.443754 3 18 0 8 0.561397 3 21 0 8 0.443877 3 22 0 8 0.474445 3 24 0 8 0.506585 3 28 0 8 0.570998 3 30 0 8 0.525658 3 31 0 8 0.445055 3 32 0 8 0.482473 3 33 0 8 0.457955 3 35 0 8 0.457347 3 36 0 8 0.454634 3 37 0 8 0.420391 3 39 0 8 0.514156 3 40 0 8 0.440745 3 45 0 8 0.442598 3 49 0 8 0.443484 3 50 0 8 0.518729 3 52 0 8 0.602463 3 54 0 8 0.503902 3 61 0 8 0.442004 4 22 0 8 0.419872 4 31 0 8 0.42026 4 32 0 8 0.436382 4 33 0 8 0.436742 4 35 0 8 0.421176 5 14 0 8 0.782749 5 15 0 8 0.605852 5 18 0 8 0.623567 5 19 0 8 0.435473 5 21 0 8 0.637925 5 22 0 8 0.602344 5 24 0 8 0.707265 5 25 0 8 0.680766 5 26 0 8 0.443178 5 28 0 8 0.66312 5 30 0 8 0.553141 5 31 0 8 0.437853 5 32 0 8 0.728312 5 33 0 8 0.588657 5 34 0 8 0.544286 5 35 0 8 0.723102 5 36 0 8 0.557654 5 37 0 8 0.531417 5 38 0 8 0.577032 5 39 0 8 0.464077 5 40 0 8 0.534128 5 41 0 8 0.649078 5 43 0 8 0.642371 5 46 0 8 0.613763 5 47 0 8 0.532346 5 49 0 8 0.429498 5 50 0 8 0.562168 5 52 0 8 0.512679 5 54 0 8 0.533894 5 57 0 8 0.757673 5 58 0 8 0.49087 5 60 0 8 0.420671 5 61 0 8 0.671891 6 18 0 8 0.559463 6 21 0 8 0.419825 6 22 0 8 0.451495 6 24 0 8 0.461107 6 31 0 8 0.506566 6 32 0 8 0.544684 6 33 0 8 0.574171 6 34 0 8 0.500207 6 35 0 8 0.558716 6 36 0 8 0.431863 6 37 0 8 0.452066 6 40 0 8 0.448067 6 41 0 8 0.607795 6 54 0 8 0.502849 6 57 0 8 0.471536 7 18 0 8 0.699984 7 22 0 8 0.461248 7 24 0 8 0.557466 7 25 0 8 0.62053 7 28 0 8 0.526667 7 29 0 8 0.458433 7 30 0 8 0.442555 7 31 0 8 0.609908 7 32 0 8 0.588566 7 33 0 8 0.537586 7 34 0 8 0.500726 7 35 0 8 0.607589 7 36 0 8 0.49088 7 37 0 8 0.625134 7 38 0 8 0.514003 7 39 0 8 0.606112 7 40 0 8 0.52169 7 41 0 8 0.677468 7 43 0 8 0.489836 7 44 0 8 0.465753 7 45 0 8 0.48862 7 46 0 8 0.479149 7 49 0 8 0.565502 7 50 0 8 0.5107 7 54 0 8 0.499951 7 57 0 8 0.658813 7 61 0 8 0.454001 7 62 0 8 0.491532 8 22 0 8 0.432557 8 24 0 8 0.508443 8 25 0 8 0.436658 8 30 0 8 0.450706 8 32 0 8 0.598131 8 33 0 8 0.495913 8 34 0 8 0.515915 8 35 0 8 0.625056 8 36 0 8 0.469595 8 38 0 8 0.470074 8 46 0 8 0.426085 8 57 0 8 0.434358 9 18 0 8 0.580015 9 21 0 8 0.513137 9 22 0 8 0.49133 9 24 0 8 0.598388 9 25 0 8 0.58295 9 28 0 8 0.504573 9 30 0 8 0.478907 9 31 0 8 0.438446 9 32 0 8 0.649339 9 33 0 8 0.536527 9 34 0 8 0.524262 9 35 0 8 0.663141 9 36 0 8 0.477391 9 37 0 8 0.452417 9 38 0 8 0.474161 9 39 0 8 0.428304 9 40 0 8 0.431533 9 41 0 8 0.607424 9 43 0 8 0.597661 9 46 0 8 0.507675 9 49 0 8 0.427037 9 50 0 8 0.449231 9 54 0 8 0.475825 9 57 0 8 0.634028 9 58 0 8 0.446595 9 61 0 8 0.471429 9 62 0 8 0.426528 10 21 0 8 0.483178 10 24 0 8 0.50206 10 25 0 8 0.420717 10 32 0 8 0.497511 10 33 0 8 0.454352 10 35 0 8 0.509274 10 36 0 8 0.420962 10 37 0 8 0.422759 10 57 0 8 0.524116 11 20 0 8 0.46148 11 21 0 8 0.702701 11 22 0 8 0.704566 11 23 0 8 0.629773 11 24 0 8 0.825464 11 25 0 8 0.814766 11 26 0 8 0.61589 11 28 0 8 0.654925 11 29 0 8 0.614031 11 30 0 8 0.591045 11 31 0 8 0.516422 11 32 0 8 0.767347 11 33 0 8 0.688092 11 34 0 8 0.631737 11 35 0 8 0.780032 11 36 0 8 0.652248 11 37 0 8 0.677797 11 38 0 8 0.673306 11 39 0 8 0.569242 11 40 0 8 0.650766 11 41 0 8 0.785515 11 42 0 8 0.536361 11 43 0 8 0.729658 11 44 0 8 0.565963 11 45 0 8 0.597167 11 46 0 8 0.800907 11 47 0 8 0.738904 11 49 0 8 0.675401 11 50 0 8 0.645445 11 52 0 8 0.49605 11 54 0 8 0.581883 11 56 0 8 0.475443 11 57 0 8 0.787162 11 58 0 8 0.624134 11 60 0 8 0.498151 11 61 0 8 0.6498 11 62 0 8 0.453981 12 21 0 8 0.705303 12 22 0 8 0.703702 12 23 0 8 0.588231 12 24 0 8 0.718142 12 25 0 8 0.720709 12 26 0 8 0.641911 12 28 0 8 0.668916 12 29 0 8 0.479058 12 30 0 8 0.567827 12 31 0 8 0.489263 12 32 0 8 0.632455 12 33 0 8 0.677485 12 34 0 8 0.478097 12 35 0 8 0.636587 12 36 0 8 0.776121 12 37 0 8 0.701311 12 38 0 8 0.563947 12 39 0 8 0.633009 12 40 0 8 0.656393 12 41 0 8 0.618638 12 42 0 8 0.580237 12 43 0 8 0.570404 12 44 0 8 0.549609 12 45 0 8 0.639167 12 46 0 8 0.610565 12 47 0 8 0.470568 12 48 0 8 0.543696 12 49 0 8 0.613006 12 50 0 8 0.495098 12 52 0 8 0.445219 12 54 0 8 0.609119 12 56 0 8 0.58243 12 57 0 8 0.625074 12 58 0 8 0.450309 12 60 0 8 0.433326 12 61 0 8 0.45875 13 24 0 8 0.539079 13 25 0 8 0.426574 13 32 0 8 0.453771 13 35 0 8 0.453485 13 57 0 8 0.45774 14 23 0 8 0.455134 14 24 0 8 0.715013 14 25 0 8 0.784104 14 26 0 8 0.428714 14 28 0 8 0.643663 14 30 0 8 0.510357 14 32 0 8 0.663244 14 33 0 8 0.581072 14 34 0 8 0.485174 14 35 0 8 0.671176 14 36 0 8 0.482491 14 37 0 8 0.507404 14 38 0 8 0.526042 14 40 0 8 0.438615 14 41 0 8 0.626769 14 42 0 8 0.491364 14 43 0 8 0.820529 14 44 0 8 0.459083 14 45 0 8 0.490088 14 46 0 8 0.713737 14 47 0 8 0.653619 14 49 0 8 0.425248 14 50 0 8 0.590891 14 52 0 8 0.432498 14 54 0 8 0.478517 14 57 0 8 0.719884 14 58 0 8 0.578745 14 61 0 8 0.663962 15 24 0 8 0.870739 15 25 0 8 0.830342 15 26 0 8 0.576083 15 28 0 8 0.810771 15 29 0 8 0.543709 15 30 0 8 0.703936 15 31 0 8 0.490163 15 32 0 8 0.737784 15 33 0 8 0.752524 15 34 0 8 0.527346 15 35 0 8 0.720275 15 36 0 8 0.540287 15 37 0 8 0.576903 15 38 0 8 0.617429 15 39 0 8 0.483209 15 40 0 8 0.61624 15 41 0 8 0.771496 15 42 0 8 0.467805 15 43 0 8 0.703748 15 44 0 8 0.512121 15 45 0 8 0.575499 15 46 0 8 0.779671 15 47 0 8 0.760894 15 49 0 8 0.634652 15 50 0 8 0.667747 15 52 0 8 0.471139 15 54 0 8 0.600476 15 56 0 8 0.441771 15 57 0 8 0.79004 15 58 0 8 0.610317 15 61 0 8 0.729051 16 25 0 8 0.496914 16 26 0 8 0.478699 16 28 0 8 0.740027 16 30 0 8 0.478995 16 32 0 8 0.494123 16 33 0 8 0.474146 16 35 0 8 0.445213 16 36 0 8 0.432606 16 37 0 8 0.470105 16 40 0 8 0.428064 16 46 0 8 0.428252 16 50 0 8 0.425035 16 54 0 8 0.431276 17 26 0 8 0.420645 17 28 0 8 0.584381 17 33 0 8 0.463984 17 36 0 8 0.424488 17 39 0 8 0.451245 17 40 0 8 0.526916 17 45 0 8 0.504958 17 46 0 8 0.451853 17 49 0 8 0.434726 18 28 0 8 0.635248 18 30 0 8 0.493697 18 31 0 8 0.536048 18 32 0 8 0.502297 18 33 0 8 0.529422 18 35 0 8 0.467282 18 36 0 8 0.500036 18 37 0 8 0.52784 18 39 0 8 0.529671 18 40 0 8 0.577302 18 41 0 8 0.643216 18 43 0 8 0.546871 18 45 0 8 0.475153 18 46 0 8 0.737717 18 47 0 8 0.57574 18 49 0 8 0.576863 18 50 0 8 0.502796 18 54 0 8 0.548923 18 57 0 8 0.641247 18 58 0 8 0.430625 18 60 0 8 0.439279 18 61 0 8 0.456206 19 28 0 8 0.450878 19 32 0 8 0.58766 19 35 0 8 0.568768 19 57 0 8 0.41953 21 32 0 8 0.535053 21 33 0 8 0.481651 21 35 0 8 0.53236 21 36 0 8 0.426702 21 37 0 8 0.426309 21 40 0 8 0.499343 21 41 0 8 0.463688 21 43 0 8 0.543857 21 45 0 8 0.420365 21 46 0 8 0.474658 21 47 0 8 0.484569 21 54 0 8 0.433119 21 57 0 8 0.557445 21 60 0 8 0.494953 21 61 0 8 0.445441 22 31 0 8 0.438587 22 32 0 8 0.680779 22 33 0 8 0.629438 22 34 0 8 0.6471 22 35 0 8 0.667915 22 36 0 8 0.610179 22 37 0 8 0.545649 22 38 0 8 0.636115 22 39 0 8 0.599021 22 40 0 8 0.698273 22 41 0 8 0.598712 22 42 0 8 0.493335 22 43 0 8 0.570088 22 45 0 8 0.715986 22 46 0 8 0.783608 22 47 0 8 0.472264 22 49 0 8 0.645618 22 50 0 8 0.560552 22 54 0 8 0.482683 22 56 0 8 0.556564 22 57 0 8 0.604569 22 58 0 8 0.438936 22 61 0 8 0.49963 23 33 0 8 0.444715 24 33 0 8 0.550627 24 34 0 8 0.480246 24 35 0 8 0.695171 24 36 0 8 0.534769 24 37 0 8 0.647951 24 38 0 8 0.602855 24 40 0 8 0.577116 24 41 0 8 0.570589 24 43 0 8 0.632692 24 45 0 8 0.478005 24 46 0 8 0.754801 24 47 0 8 0.608291 24 49 0 8 0.523065 24 50 0 8 0.494457 24 52 0 8 0.449182 24 54 0 8 0.467203 24 56 0 8 0.432728 24 57 0 8 0.690569 24 58 0 8 0.503783 24 60 0 8 0.507962 24 61 0 8 0.617856 25 34 0 8 0.659076 25 35 0 8 0.827386 25 36 0 8 0.630393 25 37 0 8 0.654651 25 38 0 8 0.689232 25 39 0 8 0.679512 25 40 0 8 0.794344 25 41 0 8 0.783363 25 42 0 8 0.515731 25 43 0 8 0.876427 25 44 0 8 0.557338 25 45 0 8 0.715477 25 46 0 8 0.769709 25 47 0 8 0.734036 25 49 0 8 0.596191 25 50 0 8 0.713388 25 52 0 8 0.473052 25 54 0 8 0.523343 25 56 0 8 0.500301 25 57 0 8 0.810317 25 58 0 8 0.6103 25 60 0 8 0.440229 25 61 0 8 0.839413 26 35 0 8 0.652617 26 36 0 8 0.842516 26 37 0 8 0.716759 26 38 0 8 0.589959 26 39 0 8 0.742955 26 40 0 8 0.772937 26 41 0 8 0.656779 26 42 0 8 0.470763 26 43 0 8 0.702155 26 45 0 8 0.763754 26 46 0 8 0.839112 26 47 0 8 0.695193 26 49 0 8 0.783953 26 50 0 8 0.593385 26 52 0 8 0.474617 26 54 0 8 0.665015 26 56 0 8 0.459505 26 57 0 8 0.640573 26 58 0 8 0.433706 26 60 0 8 0.482214 26 61 0 8 0.574627 27 36 0 8 0.419323 27 46 0 8 0.437005 27 60 0 8 0.495785 28 37 0 8 0.536187 28 38 0 8 0.502881 28 39 0 8 0.456124 28 40 0 8 0.495284 28 41 0 8 0.508931 28 43 0 8 0.554023 28 45 0 8 0.50306 28 46 0 8 0.656418 28 47 0 8 0.472858 28 49 0 8 0.454009 28 50 0 8 0.506282 28 52 0 8 0.486474 28 54 0 8 0.620031 28 56 0 8 0.453473 28 57 0 8 0.602502 28 58 0 8 0.456993 28 60 0 8 0.646094 28 61 0 8 0.547635 29 38 0 8 0.479866 29 40 0 8 0.464707 29 41 0 8 0.586933 29 43 0 8 0.461765 29 46 0 8 0.487831 29 57 0 8 0.601728 29 61 0 8 0.433603 30 39 0 8 0.546278 30 40 0 8 0.586709 30 41 0 8 0.641242 30 42 0 8 0.544241 30 43 0 8 0.63671 30 45 0 8 0.584393 30 46 0 8 0.775279 30 47 0 8 0.511795 30 50 0 8 0.551213 30 51 0 8 0.428032 30 52 0 8 0.565381 30 54 0 8 0.573923 30 57 0 8 0.678185 30 58 0 8 0.443351 30 61 0 8 0.646054 31 40 0 8 0.567563 31 41 0 8 0.600173 31 43 0 8 0.481426 31 46 0 8 0.538473 31 49 0 8 0.476435 31 51 0 8 0.435703 31 52 0 8 0.430348 31 54 0 8 0.574622 31 57 0 8 0.609212 32 41 0 8 0.796151 32 42 0 8 0.624201 32 43 0 8 0.767869 32 44 0 8 0.45649 32 45 0 8 0.505881 32 46 0 8 0.778286 32 47 0 8 0.667723 32 49 0 8 0.429623 32 50 0 8 0.71786 32 51 0 8 0.475322 32 52 0 8 0.527711 32 53 0 8 0.484328 32 54 0 8 0.593613 32 56 0 8 0.431328 32 57 0 8 0.828825 32 58 0 8 0.560421 32 60 0 8 0.436253 32 61 0 8 0.81948 33 42 0 8 0.632055 33 43 0 8 0.720339 33 44 0 8 0.48875 33 45 0 8 0.561265 33 46 0 8 0.637941 33 47 0 8 0.476306 33 49 0 8 0.551921 33 50 0 8 0.50949 33 51 0 8 0.437465 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37 57 0 8 0.734826 37 58 0 8 0.440259 37 60 0 8 0.455113 37 61 0 8 0.533659 38 47 0 8 0.629469 38 49 0 8 0.516129 38 50 0 8 0.635182 38 51 0 8 0.426842 38 52 0 8 0.480482 38 53 0 8 0.460339 38 54 0 8 0.644581 38 56 0 8 0.538194 38 57 0 8 0.741111 38 58 0 8 0.501103 38 60 0 8 0.537316 38 61 0 8 0.652128 39 49 0 8 0.603127 39 50 0 8 0.499984 39 51 0 8 0.423486 39 52 0 8 0.500779 39 54 0 8 0.654292 39 56 0 8 0.589674 39 57 0 8 0.667719 39 60 0 8 0.511945 40 49 0 8 0.732341 40 50 0 8 0.50927 40 52 0 8 0.455927 40 54 0 8 0.599158 40 56 0 8 0.586514 40 57 0 8 0.720707 40 58 0 8 0.475362 40 60 0 8 0.628207 40 61 0 8 0.529636 41 50 0 8 0.727543 41 51 0 8 0.452108 41 52 0 8 0.457195 41 54 0 8 0.666706 41 56 0 8 0.48798 41 57 0 8 0.838864 41 58 0 8 0.536455 41 61 0 8 0.658035 41 62 0 8 0.573371 42 57 0 8 0.582073 43 52 0 8 0.486567 43 54 0 8 0.725953 43 56 0 8 0.546791 43 57 0 8 0.820109 43 58 0 8 0.631547 43 61 0 8 0.818565 44 54 0 8 0.673355 44 56 0 8 0.547812 44 57 0 8 0.743521 44 58 0 8 0.505728 44 61 0 8 0.506233 45 54 0 8 0.539158 45 57 0 8 0.595106 45 61 0 8 0.469641 46 56 0 8 0.580829 46 57 0 8 0.806936 46 58 0 8 0.585879 46 60 0 8 0.589575 46 61 0 8 0.780977 47 56 0 8 0.618096 47 57 0 8 0.94043 47 58 0 8 0.705488 47 60 0 8 0.662374 47 61 0 8 0.876434 48 57 0 8 0.620741 48 60 0 8 0.502519 48 61 0 8 0.576731 49 58 0 8 0.455765 49 60 0 8 0.571055 49 61 0 8 0.643876 50 61 0 8 0.729341 51 61 0 8 0.535863 52 61 0 8 0.629346 END