(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0468 BcR103A, Bacillus cereus, 109 residues 
              10             20                   30        40        5
              |              |                    |         |         
   1 MERASLNRIGKDVYYMQI.....KG.....EGTI.....E.KVDGRNLRNYTLPAYDEDGVKKQI
   2 CERASLNRIGKDVYYMQI.....KG.....EGTI.....E.KVDGRNLRNYTLPAYDEDGVKKQI
   3 CERASLNRIGKDVYYVQI.....KG.....EGTI.....E.KVEGRNLRNYTLPAYDENGVKKQI
   4 CERASLNRIGKDVYYVQI.....KG.....AGDT.....E.KVEGRNLRNYTLPAYDEDGVKKQI
   5 CERASLNRIGKDVYYMQI.....KG.....EGTI.....E.KVDHRNLRNYTLSAYDEDGVKKQI
   6 LVGCDLNRMGKDTYYVQI.....TV.....DGKVyegkaD.DGTRYTDYQYKLAGFDEEGKEKTM
   7 CERASLNRIGKDVYYMQI.....KG.....EGTI.....E.KVDHRNLRNYTLSAFDEDGVKKQI
   8 CERASLNKIGKDVYYMQI.....KG.....EGAI.....E.KVDGRNLRNYTLPAYHEDGVKKQI
   9 CERASLHRIGKDVYYVHV.....KG.....ESVI.....E.KVEGRSLRNYTLPAYDEDGAKKQI
  10 LVGCDLNRMGKDEYYVQI.....TV.....DGKEvhskaD.NGQKFKDYEYKLTGFDKDGKEKEL
  11 LVGCDLNRMGKDEYYVQI.....TV.....DGKEvhskaD.NGQKYKDYEYKLTGFDKDGKEKEL
  12 LVGCDINRMGKDEYYVQI.....TV.....DGKEyhgksD.NGEPYKDYQYKLTGFDKDGKEKEL
  13 LVGCDLNRMGKDEYYVQI.....TV.....DGKEyngksD.NGEPYKDYQYKLTGFDKEGKEKEL
  14 LVGCDLNRMGKDEYYVQI.....TV.....DGKEfdskaS.DGQKFKDYEYKLTGFDKDGKEKEL
  15 LVGCDLNRMGKDEYYVQI.....TV.....DGKEfdskaS.DGQKFKDYEYKLTGFDKDGKEKEL
  16 LVGCDLNRMGKDEYYVQI.....TV.....DGKEfdskaS.NGQKFKDYEYKLTGFDKDGKEKEL
  17 LVGCDINRMGKDEYYVQI.....TV.....DGKEtyskaD.NGEKFKDYEYKLTGFDKDGKEKEL
  18 LVGCDINRMGKDEYYVQI.....TV.....DGKEtyskaD.NGEKFKDYEYKLTGFDKDGKEKEL
  19 LVGCDLNRMGKDEYYVQI.....TV.....DGKEyngksD.NGEPYKHFEYKLKGFDKDGKEKEL
  20 LVGCDLNRMGKDEYYVQI.....TV.....DGKEyngksD.NGEPYKHFEYKLKGFDKDGKEKEL
  21 LVGCDLNRMGKDEYYVQI.....TV.....DGKEyngksN.DGAPYKDYQYKLTGFDKEGKEKEL
  22 LVGCDLNRMGKDEYYVQI.....TV.....DGKEyngksD.NGEPYKHFEYKLKGFDKDGKEKEL
  23 LVGCDINRMGKDEYYVQI.....TA.....DGIEkneksD.NGEPYKYFEYKLKGFDKDGKEKEL
  24 LVGCDINRMGKDQYYVQI.....TA.....DGIEkneksH.SGEPYKYFEYKLKGFDKDGKEKEL
  25 -DVSSPSKIGTEEYYVQI.....QG.....EGEI.....K.NNKRV----YALPTYNKDGDEKKV
  26 -DVSSPSKIGTVEYYVQI.....QR.....EGEI.....K.GNERV----YTLLTYDKEGTEKKV
  27 -DVSSPSKIGTVEYYVQI.....QR.....EGEI.....K.GNERV----YTLLTYDKEGTEKKV
  28 -SGCNLNRLGTDTYYVQI.....TK.....DGEKlke..K.NVNGDTTYDYKLPGFDKDGKEKEM
  29 -SGCNLNRVGTDEYYVHI.....TG.....NGEEdtskfD.DGEEYSVFKYELAGFDEDGQEKTM
  30 -YFKNANHIGADISYVKI.....TT.....DGEK.....G.K-NVSFNYSYTMPAYDEAGKETEV
  31 -YFKNANHIGADVSYVKI.....TT.....DGEK.....G.K-NVSFNYSYTMPAYDEAGKETEV
  32 -YFKNANHIGADVSYIKI.....TT.....DGEK.....G.K-NVSFNYSYTMPAYDEAGKETEV
  33 -YFKNANHIGADVSYIKI.....TT.....DGEK.....G.K-NVSFNYSYTMPAYDEAGKETEV
  34 -YFKNANHIGADVSYVKI.....TT.....DGEK.....G.K-NVSFNYSYTMPAYDEAGKETEV
  35 -YFKNANKIGADTSYVKI.....TK.....DPTK.....G.K-EISFNYNYTLPSYDEDGKETEV
  36 -DIRSLKLYGKDKYYVQI.....KG.....EGEI.....K.D----KTRVYTLPAYDEEGAEKKI
  37 -YFKNANKIGADASYVKI.....TK.....DPTK.....S.N-EISFNNNYTLPAYDENGKETEV
  38 -YFKNANKIGADASYVKI.....TK.....DPTK.....G.K-EISFNNNYTLPAYDENGKETEV
  39 --LKNGKKMGSEQLYVKI.....TK.....DGVQ.....G.K-DVGFNYSYTLPAYNEDGKEKEV
  40 -MTVDFNRLNKDTYYVHI.....TA.....DGEVeeykaS.NGEIFKMYWYELPAYNKNGKEKTL
  41 ---ADYVVMGGEEYYVQI.....TT.....DGTKtvsksD.SGQETVNYRYILPGYTKEGKEKEL
  42 ----YKVSYGGGTYYVQI.....TK.....DGKEkevsdN.SGKKFKEYDYDIKSYQKDGKEKRV
  43 ----YKVSYGGGTYYVQI.....TK.....DGKEqqdt.A.NGQKYTRYSYQMNSYKKDGKEKKV
  44 -TGCDFNRMFKDQAYTQI.....KG.....EGKL.....D.NQH--KQYEYTLPAYNEKGEEIQL
  45 --KFDFNRAFKDEAYTQI.....KG.....EGKL.....D.NQH--KQYEYTLPAYNEKGEEIQL
  46 ------------------.....--.....----.....K.GKNVSFNYSYTMPAYDEAGKETEV
  47 -TGCDFNKSFKDQAYTQI.....KG.....EGKL.....V.D----GRYQYTLPSYNDEGKQITV
  48 ---IDFNRVGKDHAYTLI.....TE.....NGDTeetvtG.SGEVFTRYHYSQSAFTDEGEEITV
  49 ---VDWNRIGKDTLFVKV.....EAvsdveETTL.....E.NGEVMKRYVYTQPAFTSDGKSKEV
  50 -------FYGGEAYYTKI.....TT.....NGEMsatqaD.NGEKFTTYTYKQAAYNKDGEKKQV
  51 --SCNINRIGKDNVYVEVidyvdTQ.....ETKL.....D.SGEIMTRYIYNQKAFDEEGKSVEV
  52 --------YGGETYYTQI.....TT.....DGTKqvdkdT.EGKSYVSYQYDLPAYDQAGHQKKV
  53 ------------------.....--.....----.....-.------------PAYDEAGKETEV
  54 ---------GGTSCYVQI.....NN.....DGKKtiekgH.ENNVWHGFSYKEKVHEKSGKEKVL
  55 ----------EDVYYAVV.....DS.....DGEY.....EvKSKGFGRWSYKFKGYDESGKEQKI
  56 -----------GIYYAVV.....DN.....DGKY.....GaENKGFARWEYKFKGYNESGQEQKI
  57 ------INYGGTNYYVQI.....HN.....DGKKleektQ.SGSVWHGYGYKEKAYNNAGQEKTL
  58 -----------ESVYVQI.....NK.....DGKH.....L.SP---GRYEYTLEGYNDTGKEKEI
  59 ----------GTSCYVQI.....NN.....DGKKtiekvH.ENNVWHGFSYKEKVHEKSGKEKVL
  60 ----------KEVVYVQI.....YE.....DPAP.....H.G----QRYKYTLTGYTEDGEEKEI
  61 ----YHSNYGTKTYYTQI.....TT.....KGERktgkdD.SGKPYVYYHYSQPGYSDNGVKKEL
  62 ------------DVYVQI.....DR.....DGRH.....L.SP---GGTEYTLDGYNASGKKEEV
  63 -------------VYVEI.....DE.....DGTK.....N.E---LGDYVYEIQGVDEQGQERTV
  64 ------------DYYVQV.....SD.....PLKK.....N.GKNQVGAYTYMTDGFDKDGVGHTV
  65 -------PAGKTVYYTKI.....TG.....PGVQ.....G.QN---GRYDYKVIAYDEKKKKEEL
  66 -------------YYTQI.....DN.....RWVT.....DiAPHGAMNYKYTLVAYDESGNAKDV
  67 ---VDPNRLLADVYYVKV.....PS.....AEV-.....-.ATQTSSGYRYDLIGYDEDGKKRPL
  68 ------------EYYVKT.....QK.....PSKVevv..D.KEKDFYIYHYNQTGYTKDGKSKKI
  69 -YFKNANHIGADVSYIKI.....TT.....DGEK.....G.K-NVSFNYSYTMPAYDEAGKKQEV
  70 ------------------.....--.....---V.....P.DYHHKGRAMYSLKSFDESGSRNEY
  71 -------------HYAII.....DN.....DGKE.....L.GGN--KGREYTVKAYDKDGKEKEV
  72 ------------------.....--.....---V.....P.DYHHKGRAMYSLKSFDESGSRNEY
  73 -------------HYAII.....DN.....DGKE.....L.GGN--KGREYTVKAYDKDGKEKEV
  74 ------------------.....--.....---V.....P.DYHHKGRAMYSLKSFDESGSRNEY
  75 ------------------.....--.....----.....D.SVNGYGIASYTQVAADEEGKTREI
  76 -------------HYAII.....DN.....DGKE.....L.GGN--KGREYTVKAYDKDGKEKEV
  77 -------------YYLKA.....ED.....HAEK.....P.DN---GKYNYTLTGYDASGHKQQI
  78 -------------HYAII.....DN.....DGKE.....L.GGN--KGREYTVKAYDKDGKEKEV
  79 -------------HYAII.....DN.....DGKE.....L.GGN--KGREYTVKAYDKDGKEKEV


      0        60        70        80        90       100         
     |         |         |         |         |         |         
   1 TFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEISSIEVKSYEEIQKADLPEKVKDKFTIK
   2 TFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEISSIEVKSYEEIQKADLPEKVKDKFTIK
   3 TFRSTKKENDHKLNEDALLRLFVNQDDNNKNEISSIEVKSYEEIQKADLPEKIKEKFTMK
   4 TFRSTKKENDHKLNEDAFLRLYVDQDDNNKNEISSIEVTSYEEIQKADLPEKVKDKFTIK
   5 TFRSTKKENNHKLNEDAFLRLYVDQDDNSNNEISSIEVKSYEEIQKTDLPKKVKDKFTIK
   6 EFTAQK-----NLRKEAFLRIYYSDK---------KGVTAWEEVQKDELPAKVKEKLGVK
   7 TFRSTKKENNHKLNEDAFLRLYVDQDDNSNNEISSIEVKSYEEIQKTDLPKKVKDKFTIK
   8 TFRSTKKENDHKLNEDAFLRLYVDQDDNSKNEISSIEVKSYEEIQKTDLPKKVKDKFTIK
   9 TFRSTKKENDHKLNENAFLSLYVDQDDKDKNEISSIEVKSYEEIQKADLPEKVKKKFNV-
  10 EFTAQK-----NLRKDAFLRVYHSDK---------KGVTAWEEVKKDELPAKVKEKLGAK
  11 EFTAQK-----NLRKEAFLRVYHSDK---------KGVSAWEEVKKDELPAKVKEKLGVK
  12 EFTAQK-----NLRKEAFLRVYHSDK---------KGVTAWEEVKKDELPAKVKEKLGAK
  13 EFMAQK-----NLRKEAFLRVYHSDK---------KGVSAWEEVKKDELPAKVKEKLNVK
  14 EFIAQK-----NLRKEAFLRVYHSDK---------KGVTAWEEVKKDELPAKVKEKLGVK
  15 EFIAQK-----NLRKEAFLRVYHSDK---------KGVTAWEEVKKDELPAKVKEKLGVK
  16 EFIAQK-----NLRKEAFLRVYHSDK---------KGVTAWEEVKKDELPAKVKEKLSVK
  17 EFTAQK-----NLRKEAFLRVYNSDK---------KGVTAWEEVKKDELPAKVKEKLGAK
  18 EFTAQK-----NLRKEAFLRVYNSDK---------KGVTAWEEVKKDELPAKVKEKLGAK
  19 EFNAQK-----NLRKEAFLRVYHSDK---------KGVSAWEEVKKDELPAKVKEKLGAK
  20 EFNAQK-----NLRKEAFLRVYNSDK---------KGVTAWEEVKKDELPAKVKEKLGXK
  21 EFTAQK-----NLRKEAFLRVFHSDK---------KGVTAWEEVKKDELPAKVKEKLSVK
  22 EFNAQK-----NLRKEAFLRVYNSDK---------KGVTAWEEVKKDELPAKVKEKLGAK
  23 EFTAQK-----NLRKDAFLRVYHSDK---------KGVTAWEEVKKDELPAKVKEKLSVK
  24 EFTAQK-----NLRKDAFLRVYHSDK---------KGVSAWEEVKKDELPAKVKEKLGAK
  25 TFASQK-PNNEKMKENAFLRLYIKQKDEKKTDIPDTEVKSYEEVQKSDLPAKTKEKLGVK
  26 TFTSQK-PNNEKLKENAFLRLYIKQEDKEKADIPDTEVKSYEEIQKDDLPAKTKEQLGVK
  27 TFTSQK-PNNEKLKENAFLRLYIKQEDKEKADIPDTEVKSYEEIQKDDLPAKTKEQLGVK
  28 EFTALK-----NLRKEAFLRIYYSEK---------KGVKSWEEVKKDELPTKVKEKLKV-
  29 EFTADK-----NLRIGAFLRLFYSEN---------KGVKSWEEVDKDDIPAKAKEQLGVK
  30 TFSADK-----NLRKGAYLKLYIKED---------KGVTSYEEVPEKEVPSKAAEKL---
  31 TFSADK-----NLRKGAYLKLYIKED---------KGVTSYEEVPEKEVPSKAAEKL---
  32 TFSADK-----NLRKGAYLKLYIKED---------KGVTSYEEVPEKEVPSKAAEKL---
  33 TFSADK-----NLRKGAYLKLYIKED---------KGVTSYEEVPEKEVPSKAAEKL---
  34 TFSADK-----NLRKGAYLKLYIKED---------KGVTSYEEVPEKEVPSKAAEKL---
  35 TFSADK-----ELRKDAYLKLYIKED---------KGVTSFEEVPEKEVPAKAAEKL---
  36 SFTSHKAENDKKLKEDAFLRLYVSEDNDK-----SVDVKSYEEVKKEDLPEKVKKKLNVK
  37 TFSADK-----ELRKGAYLKLYIKED---------KGVTSFEEVPEKEVPAKAAEKL---
  38 TFSADK-----ELRKGAYLKLYIKED---------KGVTSFEEVPEKEVPAKAAEKL---
  39 TFTADK-----NLRKGAYLKLYYKKS---------KGVTTFEEVSSKNVPAKAAKKL---
  40 KFSAHK-----NLRHDAYLKLYVKKE---------TEVTSYDEVKFHEVPNKAQDQ----
  41 DFKGQL---TRPLRKGAYLKITWNKN---------KGVTSYEEVEKKDVPKTALEKL---
  42 TFMADH-----NLRKEAYLKLTVNSV---------KGVTSWEEVKKSEVPKEALKKL---
  43 EFTADH-----NLRKEAYLELTVNSV---------KGVTSWEEVKKAEVPKEALKKI---
  44 TFSKFG---EDQFKQGAYLRLYMKDKDG------KKVVTSYDEVKKEELPDKVKEKLQ--
  45 TFSKFG---EDQFKQGAYLRLYMKDKDG------KKVVTSYDEVKKEELQTKVKEKLQV-
  46 TFSADK-----NLRKGAYLKLYIKED---------KGVTSYEEVPEKEVPSKAAEKL---
  47 TFGKPT---GEKFKEDAYLRLYLKSKDG------EKVVTSYEEVQKNDLPTKVKEKLQV-
  48 SFSSHK-----NLRHGAYLRLYMNH----------TDVTSYDEVQTEDVPAQALETL---
  49 TFTAAN-----KLREGAYLRLYVKDG---------DTVTSYEEVSRADVPQS--------
  50 TLREER---EHPLKMNAYLKLKVNPR---------KGVLSWEEIKASEVPKNAAEKI---
  51 EFSAGK-----ILRQEGYLMLYVKNG---------NEVTSYEEVEWNEIPSKAQ------
  52 SFNSAK---SSRLQKQAYLELKVNDR---------KGVMSWQKVDKADLPKAAEK-----
  53 TFSADK-----NLRKGAYLKLYIKED---------KGVTSYEEVPEKEVPSKAAEKL---
  54 EFTSTH-----NLRKQAYLKLTYNKG---------KGVTNWEEIKKSEVPKKAL------
  55 MLTTTK-----HLRIGAYLKIKSKRT----------YGMQWEEVQREEIPAKAKEKVTIK
  56 AMTASK-----HLRIGAYLKIRSKGSYG----------MEWEEVQGDEIPAKVKEKVTIK
  57 DFTATH-----NLRHEAYLKLTYNKQ---------KGVTNWEEVKKTAIPKKALDK----
  58 TFSASD-----SLRRNAYLKVNAKG----------KYVETWEEVQPGGMPSAVQKKL---
  59 EFTSTH-----NLRKQAYLKLTYNKG---------KGVTNWEEIKKSEVPKKAL------
  60 TFTAGK-----VLKEKAILKVNAKGS----------FVEKWEEVQPEELPEKVRGKM---
  61 TFDSVL---PRSLKMHAYLKVGYNDK--------RQQVINWEKVNQKDIPQAAL------
  62 TFFAGK-----ELRKNAYLKVKAKG----------KYVETWEEVKFEDMPDSVQSKL---
  63 EFKANK-----NLRKGAFLRLKTKKA----------FVDSWEEVQLEDIPAEI-------
  64 TFNGMK-----KLKKGAYLKVSLFL----------GEAKSYNEISKDKVPHKPLKKLE--
  65 SFSAGK-----KLREGAYIQLYYTMI---------RGVTYWEEVSFEELPEAVQ------
  66 TFETSK-----VLTDGAYLCLKVAPI---------RGVVTWAEMQFDELPSSVQEK----
  67 SIGTSG-----LLPEGNYLRVFVKEE--------DAEVTDYEQVNVLDVPEQLK------
  68 EYTASK-----KLKQNHYLVVREKS----------HTIQSFEEVKKSKIPTKAKEK----
  69 TF----------------------------------------------------------
  70 TVGTST---PNDFIRKTYLRIHVKG----------KYVYSYEAISEKDIPEKIRKQLEV-
  71 TIDGVG-----ELQKGSYWHVLTRGK----------VLHDKVQVTIDKIPDGAKAKL---
  72 TVGTST---PNDFIRKTYLRIHVKG----------KYVYSYEAISEKDIPEKIRKQLEV-
  73 TIDGVG-----ELQKGSYWHVLTRGK----------FLHDKVQVTIDKIPDGAKAKL---
  74 TVGTST---PNDFIRKTYLRIHVKG----------KYVYSYEAISEKDIPEKIRKQLEV-
  75 TFTADH-----ELKTDHYLKVSNKG----------AHINTYEEVKQDQVPEKAL------
  76 TIDGVG-----ELQKGSYWHGLTTGK----------VLHDKVQVTIDKIPDGAKAKL---
  77 EAEADE-----KLHPGAFIKVLAYG----------TKAKSLTEVHEEEIPEGA-------
  78 TIDGVG-----ELQKGSYWHVLT-------------------------------------
  79 TIGGVG-----ELQKSSYWHVLT-------------------------------------