# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	6.509		
1pm1X	180	7.134	b.60.1.1	104189
2bw2A	140	7.528		
1z45A	699	8.202	b.30.5.4,c.2.1.2	124427,124428
1v0aA	178	8.717	b.18.1.30	119815
1bhgA	613	8.971	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
3buuA	229	12.31		
1b69A	69	13.45	d.10.1.1	37479
2rb6A	61	17.96		
1snzA	344	18.92	b.30.5.4	98930
1adwA	123	19.92	b.6.1.1	22893
2ra2A	64	20.43		
1dtgA	334	22.46	c.94.1.2	35896
1uhgA	385	23.22	e.1.1.1	88491
3bduA	62	23.26		
1p4uA	153	27.07	b.1.10.2	87780
1bqk	124	30.41		
2uurA	245	30.56		
2jn0A	61	33.13		
1bb8A	71	33.57	d.10.1.1	37478
1azpA	66	35.31	b.34.13.1	37467
1lmeA	176	38.05	d.167.1.1	84629
1bf4A	63	38.69	b.34.13.1	37461
2h2zA	306	39.24		
1vkwA	218	39.40	d.90.1.2	108695
1xyiA	66	41.14		
1v7wA	807	42.43	a.102.1.4,b.30.5.3	108411,108412
2glwA	92	44.20		
2v1oA	151	45.37		
1te7A	103	50.26	b.122.1.7	112404
1bnzA	64	50.96	b.34.13.1	37468
2g5dA	422	51.70		
2a7bA	120	52.78	b.1.10.2	126333
1yliA	153	57.24	d.38.1.1	123651
2b6dA	345	57.31	c.94.1.2	127985
1l0qA	391	57.59	b.1.3.1,b.69.2.3	77644,77645
1ckeA	227	58.70	c.37.1.1	31846
1a8e	329	61.72		
2jesA	503	67.66		
3bjkA	153	77.60		
1jsuC	84	79.94	j.55.1.1	46339
2ikbA	167	80.19		
1vpmA	169	80.36	d.38.1.1	113967
1ryoA	327	82.49	c.94.1.2	98108
1c8cA	64	83.18	b.34.13.1	59084
2hzqA	174	83.62		
1lci	550	84.70		
2jfrA	234	86.13