# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pm1X	180	7.103	b.60.1.1	104189
1v0aA	178	8.517	b.18.1.30	119815
2rb6A	61	10.07		
3buuA	229	12.21		
2bw2A	140	14.74		
1bf4A	63	15.68	b.34.13.1	37461
2ra2A	64	16.58		
1adwA	123	16.76	b.6.1.1	22893
1bhgA	613	16.91	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
1azpA	66	19.25	b.34.13.1	37467
1xyiA	66	20.05		
1bb8	71	22.31		
1z45A	699	22.91	b.30.5.4,c.2.1.2	124427,124428
1bnzA	64	24.77	b.34.13.1	37468
3bduA	62	26.41		
2jn0A	61	31.38		
1y0bA	197	31.62	c.61.1.1	122476
1bqk	124	33.86		
1p4uA	153	34.38	b.1.10.2	87780
1attA	421	38.06	e.1.1.1	42638
1b69A	69	38.21	d.10.1.1	37479
1kkeA	210	39.53	b.83.1.2,b.21.1.2	68669,68670
1c8cA	64	42.40	b.34.13.1	59084
1v7wA	807	44.69	a.102.1.4,b.30.5.3	108411,108412
2a7bA	120	47.02	b.1.10.2	126333
2jesA	503	47.49		
2v1oA	151	50.14		
1yvcA	70	50.90	b.40.4.12	124094
1rowA	109	51.34	b.1.11.2	97676
1bdsA	43	51.54	g.9.1.1	44596
1te7A	103	53.66	b.122.1.7	112404
1lmeA	176	53.79	d.167.1.1	84629
2uurA	245	54.99		
1iu1A	146	63.35	b.1.10.2	71428
1snzA	344	65.67	b.30.5.4	98930
5gcnA	166	66.49	d.108.1.1	40807
1f0cA	305	68.96	e.1.1.1	42676
2h2zA	306	69.40		
1l0qA	391	69.42	b.1.3.1,b.69.2.3	77644,77645
1fbnA	230	70.34	c.66.1.3	34181
1gywA	128	70.98	b.1.10.2	70791
1h12A	405	71.10	a.102.1.2	83447
1xvsA	126	72.56	b.1.23.1	116095
1bbxC	63	74.91	b.34.13.1	37465
1pfoA	500	78.75	f.9.1.1	43826
1pbyB	337	81.33	b.69.2.2	94422
1yliA	153	82.80	d.38.1.1	123651
1q38A	89	82.91	b.1.2.1	95663
1gyvA	120	83.88	b.1.10.2	70790
1vkwA	218	84.14	d.90.1.2	108695
1k12A	158	89.03	b.18.1.15	71978
1bb8A	71	89.37	d.10.1.1	37478