# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pm1X 180 2.893 b.60.1.1 104189 1te7A 103 3.995 b.122.1.7 112404 2uurA 245 4.471 2bw2A 140 4.678 1snzA 344 6.552 b.30.5.4 98930 1p4uA 153 7.968 b.1.10.2 87780 1xyiA 66 11.68 1y0bA 197 12.98 c.61.1.1 122476 1v0aA 178 13.18 b.18.1.30 119815 1lmeA 176 13.45 d.167.1.1 84629 1azpA 66 13.46 b.34.13.1 37467 3bduA 62 13.78 1vpmA 169 14.76 d.38.1.1 113967 1z45A 699 15.02 b.30.5.4,c.2.1.2 124427,124428 1bnzA 64 15.47 b.34.13.1 37468 2ra2A 64 16.02 1ckeA 227 17.41 c.37.1.1 31846 1yliA 153 18.06 d.38.1.1 123651 2v1oA 151 19.58 1y6hA 177 19.77 d.167.1.1 116505 2a7bA 120 20.02 b.1.10.2 126333 1bb8 71 20.14 1bf4A 63 20.86 b.34.13.1 37461 1np1A 184 21.22 b.60.1.1 27155 1lqwA 183 21.27 d.167.1.1 74210 3bjkA 153 21.82 1fbnA 230 22.68 c.66.1.3 34181 1n5nA 180 23.53 d.167.1.1 85336 1lmhA 184 23.82 d.167.1.1 74036 2inbA 140 23.88 1qveA 126 24.13 d.24.1.1 104594 2hzqA 174 24.93 1iu1A 146 25.54 b.1.10.2 71428 1gywA 128 25.84 b.1.10.2 70791 2jn0A 61 25.97 1senA 164 28.02 c.47.1.1 105465 2eisA 133 29.01 1gyvA 120 29.19 b.1.10.2 70790 1p3wA 404 31.36 c.67.1.3 87752 1b69A 69 33.67 d.10.1.1 37479 1adwA 123 34.58 b.6.1.1 22893 1cxqA 162 34.64 c.55.3.2 33621 1jsuC 84 35.45 j.55.1.1 46339 1l0qA 391 38.28 b.1.3.1,b.69.2.3 77644,77645 1kkeA 210 38.60 b.83.1.2,b.21.1.2 68669,68670 1v3yA 192 38.95 d.167.1.1 113508 2okfA 140 39.91 2fwvA 226 40.08 1f60B 94 40.85 d.58.12.1 39307 1g8sA 230 41.45 c.66.1.3 90507 1vj0A 380 41.66 b.35.1.2,c.2.1.1 100786,100787 1b7bA 310 41.96 c.73.1.1 34963 1rl4A 188 43.06 d.167.1.1 97636 2ghrA 302 43.55 c.23.16.8 135208 2ojhA 297 44.60 1amfA 233 45.12 c.94.1.1 35833 1q38A 89 45.26 b.1.2.1 95663 1z82A 335 45.53 2jesA 503 47.38 1bqk 124 47.40 1pfoA 500 48.11 f.9.1.1 43826 1gifA 115 49.25 d.80.1.3 39837 1atgA 231 50.27 c.94.1.1 35834 1a64A 97 52.63 b.1.1.1 19750 1a6pA 94 52.83 b.1.1.1 19748 3buuA 229 55.04 2os5A 119 56.98 1gh8A 89 56.98 d.58.12.1 39309 1ibyA 112 57.38 b.6.1.4 62233 2a15A 139 57.41 d.17.4.3 125973 1ub4C 85 57.84 b.129.1.1 88401 2glwA 92 57.95 1qq2A 199 58.01 c.47.1.10 33064 2rb6A 61 60.44 1bb8A 71 60.61 d.10.1.1 37478 1cdcA 99 62.69 b.1.1.1 19746 2q2bA 179 63.15 1c8cA 64 67.21 b.34.13.1 59084 1m3iA 471 67.96 f.9.1.1 91178 3c5mA 396 70.21 1h12A 405 71.14 a.102.1.2 83447 1pfo 500 71.91 2hxwA 237 71.91 1qa9A 102 72.32 b.1.1.1 19742 1bdyA 123 72.45 b.7.1.1 23190 1yvcA 70 72.60 b.40.4.12 124094 1j7xA 302 73.24 c.14.1.2 66425 1pbyB 337 73.81 b.69.2.2 94422 2pnwA 380 75.04 1d0hA 469 75.88 b.29.1.6,b.42.4.2 24265,25610 2d5xB 146 76.69 a.1.1.2 131283 2h2zA 306 76.71 2yy3A 91 77.26 1uc7A 125 77.54 c.47.1.1 99163 1igqA 62 78.09 b.34.1.3 66130 1jdpA 441 78.86 c.93.1.1 62906 2pezA 179 78.96 1div 149 79.89 1ohpA 125 80.05 d.17.4.3 118702 2pqvA 154 80.41 1t3iA 420 81.72 c.67.1.3 106354 2prdA 174 83.34 b.40.5.1 25435 1sjyA 159 84.35 d.113.1.1 98900 2h5yA 254 85.91 1pmyA 123 86.62 b.6.1.1 22888 1sg7A 96 87.86 a.239.1.1 118961 1sxvA 172 88.59 2sakA 121 89.05 d.15.5.1 37711