# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pm1X	180	6.757	b.60.1.1	104189
3buuA	229	7.987		
1bb8	71	10.24		
2rb6A	61	13.95		
1z45A	699	14.37	b.30.5.4,c.2.1.2	124427,124428
1v0aA	178	15.07	b.18.1.30	119815
1p4uA	153	18.96	b.1.10.2	87780
1bhgA	613	21.70	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
2uurA	245	24.71		
1b69A	69	25.55	d.10.1.1	37479
2ra2A	64	26.41		
3bduA	62	30.98		
2bw2A	140	32.00		
1te7A	103	38.23	b.122.1.7	112404
1bb8A	71	39.83	d.10.1.1	37478
2v1oA	151	43.82		
2jn0A	61	44.11		
1v7wA	807	46.14	a.102.1.4,b.30.5.3	108411,108412
2a7bA	120	47.55	b.1.10.2	126333
1cj3A	392	49.21	c.3.1.2,d.16.1.2	30347,37878
1iu1A	146	49.64	b.1.10.2	71428
1snzA	344	50.54	b.30.5.4	98930
1adwA	123	50.68	b.6.1.1	22893
1azpA	66	51.33	b.34.13.1	37467
2e63A	170	52.26		
1y0bA	197	53.41	c.61.1.1	122476
1bf4A	63	53.68	b.34.13.1	37461
2glwA	92	54.04		
1bdsA	43	56.06	g.9.1.1	44596
1xyiA	66	57.57		
2jesA	503	60.28		
1bqk	124	60.62		
1lmeA	176	66.15	d.167.1.1	84629
3bjkA	153	71.95		
1gywA	128	80.47	b.1.10.2	70791
1dtgA	334	83.08	c.94.1.2	35896
1vpmA	169	83.93	d.38.1.1	113967
1fnf	368	83.99		
1c8cA	64	87.87	b.34.13.1	59084
2hzqA	174	89.20