# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3buuA	229	3.565		
1bb8	71	5.894		
1pm1X	180	6.287	b.60.1.1	104189
2rb6A	61	9.462		
1p4uA	153	10.25	b.1.10.2	87780
1z45A	699	12.83	b.30.5.4,c.2.1.2	124427,124428
3bduA	62	15.71		
2ra2A	64	16.88		
2uurA	245	17.54		
1b69A	69	17.64	d.10.1.1	37479
1bhgA	613	20.02	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
1bb8A	71	22.23	d.10.1.1	37478
2bw2A	140	22.89		
1bqk	124	23.42		
2a7bA	120	25.07	b.1.10.2	126333
1adwA	123	25.82	b.6.1.1	22893
1iu1A	146	27.08	b.1.10.2	71428
1snzA	344	27.17	b.30.5.4	98930
1v0aA	178	30.78	b.18.1.30	119815
2jn0A	61	34.16		
1qq2A	199	34.60	c.47.1.10	33064
1bdsA	43	35.31	g.9.1.1	44596
1v7wA	807	36.15	a.102.1.4,b.30.5.3	108411,108412
1gywA	128	37.07	b.1.10.2	70791
1lmeA	176	37.21	d.167.1.1	84629
1pg6A	243	38.83	b.82.5.2	94673
1azpA	66	39.27	b.34.13.1	37467
2v1oA	151	40.16		
1dtgA	334	40.28	c.94.1.2	35896
1bnzA	64	45.95	b.34.13.1	37468
1bf4A	63	47.46	b.34.13.1	37461
1gyvA	120	47.50	b.1.10.2	70790
2hzqA	174	50.75		
1yliA	153	52.14	d.38.1.1	123651
1g6nA	210	52.72	a.4.5.4,b.82.3.2	16100,28139
1hpwA	129	57.24	d.24.1.1	61118
1xyiA	66	58.42		
3bjkA	153	58.68		
1l0qA	391	59.45	b.1.3.1,b.69.2.3	77644,77645
2h2zA	306	61.71		
1np1A	184	63.45	b.60.1.1	27155
1vpmA	169	63.88	d.38.1.1	113967
1lqwA	183	64.60	d.167.1.1	74210
1cj3A	392	66.28	c.3.1.2,d.16.1.2	30347,37878
1y0bA	197	69.66	c.61.1.1	122476
1te7A	103	71.45	b.122.1.7	112404
1lmhA	184	71.80	d.167.1.1	74036
1pbyB	337	74.00	b.69.2.2	94422
3bqwA	351	74.11		
2glwA	92	74.14		
1bndA	119	75.61	g.17.1.3	44793
2e63A	170	76.26		
1mbmA	198	80.23	b.47.1.3	78916
2inbA	140	80.49		
1cdcA	99	81.77	b.1.1.1	19746
1y6hA	177	83.72	d.167.1.1	116505
1h12A	405	83.98	a.102.1.2	83447
1c8cA	64	85.79	b.34.13.1	59084
1a6pA	94	86.12	b.1.1.1	19748
1qdlB	195	88.48	c.23.16.1	31437
1bbxC	63	89.46	b.34.13.1	37465
2fwvA	226	89.56		
1senA	164	89.65	c.47.1.1	105465