# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3buuA	229	0.6830		
1z45A	699	2.512	b.30.5.4,c.2.1.2	124427,124428
2aouA	292	3.337	c.66.1.19	127100
1bb8	71	5.849		
1v1pA	211	7.790	b.40.2.2,d.15.6.1	108268,108269
1fk9A	543	10.43	c.55.3.1,e.8.1.2	33607,43080
1b69A	69	12.09	d.10.1.1	37479
1bf4A	63	12.41	b.34.13.1	37461
1yliA	153	13.57	d.38.1.1	123651
1snzA	344	14.45	b.30.5.4	98930
1fnf	368	14.91		
1mbmA	198	17.47	b.47.1.3	78916
1m3iA	471	18.04	f.9.1.1	91178
2d5mA	190	20.77		
1hpwA	129	20.85	d.24.1.1	61118
1xyiA	66	21.52		
1np1A	184	21.75	b.60.1.1	27155
1lmeA	176	22.16	d.167.1.1	84629
1bb8A	71	22.27	d.10.1.1	37478
1c8gA	548	25.28	b.121.5.2	23380
1pm1X	180	26.19	b.60.1.1	104189
1adwA	123	26.38	b.6.1.1	22893
2ra2A	64	28.07		
3c5mA	396	29.12		
2bw2A	140	29.13		
2imjA	166	30.45		
1cj3A	392	31.83	c.3.1.2,d.16.1.2	30347,37878
2f1cX	286	32.93		
2rb6A	61	33.06		
1bqk	124	33.87		
2h2zA	306	34.22		
1dj0A	264	34.39	d.265.1.1	90337
1j6wA	175	34.64	d.185.1.2	62663
2i5vO	251	36.02		
1f3rB	257	40.36	b.1.1.1,b.1.1.1	20416,20417
1hk8A	605	40.93	c.7.1.3	83540
2bqxA	173	41.63		
1xwvA	129	41.98	b.1.18.7	116134
1v0aA	178	43.92	b.18.1.30	119815
1pneA	139	44.25	d.110.1.1	40866
1vpmA	169	45.10	d.38.1.1	113967
1c3oB	382	46.96	c.8.3.1,c.23.16.1	30744,31421
2q0dA	353	47.72		
2eisA	133	47.79		
1z1aA	142	48.30	d.339.1.1	124344
1xfuA	747	49.84		
1uebA	184	50.76	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
2jn0A	61	51.60		
1a9xB	379	51.90	c.8.3.1,c.23.16.1	30732,31409
1yqfA	203	52.69	d.25.1.1	123880
1n5nA	180	52.72	d.167.1.1	85336
3bduA	62	53.43		
1pbyB	337	53.74	b.69.2.2	94422
2pezA	179	55.02		
1jsdA	319	59.02	b.19.1.2	63258
1n62B	809	59.49	d.41.1.1,d.133.1.1	80092,80093
2vngA	180	59.70		
2al6A	375	60.62	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
1y6hA	177	61.15	d.167.1.1	116505
2a7bA	120	62.65	b.1.10.2	126333
2hqsA	415	63.18	b.68.4.1,c.51.2.1	136662,136663
1azpA	66	64.11	b.34.13.1	37467
1feuA	206	65.25	b.53.1.1	59801
2qo3A	915	66.02		
2uurA	245	66.35		
2fafA	608	69.38		
1iu1A	146	69.61	b.1.10.2	71428
1amx	180	70.92		
2g8cO	251	72.37		
1z0wA	207	73.72		
1dtyA	429	75.52	c.67.1.4	34495
1ymmE	249	75.91	b.1.1.1,b.1.1.2	123705,123706
1igtD	444	76.54	b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2	19767,20871,20872,20873
2gopA	347	77.48		
1khbA	625	78.26	c.91.1.1,c.109.1.1	68606,68607
1juhA	350	79.70	b.82.1.5	71884
1sh7A	284	80.88		
1attA	421	80.89	e.1.1.1	42638
1lci	550	82.19		
1crzA	403	83.19	b.68.4.1,c.51.2.1	27629,33211
1luqA	127	84.52	b.61.1.1	91128
2cnqA	306	85.23	d.143.1.1	130646
1wkbA	810	85.65		
2vktA	289	85.88		
2porA	301	85.88	f.4.3.1	43759
1je0A	236	88.01	c.56.2.1	66581
2rdyA	803	88.27		
1bdsA	43	88.78	g.9.1.1	44596
1gywA	128	88.92	b.1.10.2	70791