# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pm1X	180	8.877	b.60.1.1	104189
2bw2A	140	11.07		
1bb8	71	19.74		
3buuA	229	22.42		
1z45A	699	23.27	b.30.5.4,c.2.1.2	124427,124428
1v0aA	178	26.56	b.18.1.30	119815
1p4uA	153	28.39	b.1.10.2	87780
2ra2A	64	31.82		
3bduA	62	33.46		
2uurA	245	34.62		
2rb6A	61	38.77		
1adwA	123	40.39	b.6.1.1	22893
2v1oA	151	40.85		
1bqk	124	47.29		
1snzA	344	49.89	b.30.5.4	98930
1b69A	69	49.92	d.10.1.1	37479
1y0bA	197	52.61	c.61.1.1	122476
1te7A	103	53.62	b.122.1.7	112404
2a7bA	120	54.49	b.1.10.2	126333
1azpA	66	55.92	b.34.13.1	37467
2jn0A	61	57.50		
1xyiA	66	58.52		
1bnzA	64	61.71	b.34.13.1	37468
1iu1A	146	62.08	b.1.10.2	71428
1bhgA	613	62.75	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
1lmeA	176	63.25	d.167.1.1	84629
2inbA	140	63.25		
1z82A	335	66.48		
1dtgA	334	71.28	c.94.1.2	35896
1fbnA	230	75.70	c.66.1.3	34181
1p3wA	404	78.59	c.67.1.3	87752
1kkeA	210	83.19	b.83.1.2,b.21.1.2	68669,68670
1lqwA	183	83.62	d.167.1.1	74210
1bb8A	71	83.65	d.10.1.1	37478
1gyvA	120	84.67	b.1.10.2	70790
1gywA	128	85.19	b.1.10.2	70791
1lmhA	184	88.05	d.167.1.1	74036
1yliA	153	88.44	d.38.1.1	123651