# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3buuA	229	5.557		
1pm1X	180	6.171	b.60.1.1	104189
1bb8	71	9.872		
2bw2A	140	11.20		
1v0aA	178	15.30	b.18.1.30	119815
1b69A	69	17.48	d.10.1.1	37479
1z45A	699	18.69	b.30.5.4,c.2.1.2	124427,124428
1snzA	344	20.07	b.30.5.4	98930
1bqk	124	27.68		
1p4uA	153	28.17	b.1.10.2	87780
1adwA	123	28.55	b.6.1.1	22893
1te7A	103	32.10	b.122.1.7	112404
2uurA	245	35.66		
2ra2A	64	37.03		
1bb8A	71	37.58	d.10.1.1	37478
1xyiA	66	39.89		
3bduA	62	41.80		
1bf4A	63	41.96	b.34.13.1	37461
1bhgA	613	44.09	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
1azpA	66	44.29	b.34.13.1	37467
1bnzA	64	44.69	b.34.13.1	37468
1y0bA	197	45.47	c.61.1.1	122476
2v1oA	151	49.28		
2rb6A	61	54.21		
2e63A	170	56.95		
1dtgA	334	58.10	c.94.1.2	35896
2inbA	140	61.16		
2a7bA	120	63.06	b.1.10.2	126333
1bbxC	63	64.96	b.34.13.1	37465
1iu1A	146	69.79	b.1.10.2	71428
1l0qA	391	71.27	b.1.3.1,b.69.2.3	77644,77645
1bdsA	43	72.80	g.9.1.1	44596
2glwA	92	74.41		
1fbnA	230	77.38	c.66.1.3	34181
1lmeA	176	77.88	d.167.1.1	84629
1h12A	405	80.22	a.102.1.2	83447
1yliA	153	82.76	d.38.1.1	123651
1vpmA	169	83.50	d.38.1.1	113967
1lurA	339	84.99	b.30.5.4	84717
3bjkA	153	85.76