# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3buuA	229	0.8632		
2bw2A	140	2.242		
2v1oA	151	4.566		
2yviA	111	6.715		
2q2bA	179	7.643		
1a41A	234	7.872	d.163.1.2	42174
1ichA	112	9.96	a.77.1.2	71182
1fadA	99	11.77	a.77.1.2	18428
1adwA	123	13.76	b.6.1.1	22893
1bb8	71	14.73		
1xyiA	66	14.98		
1vpmA	169	15.86	d.38.1.1	113967
1pm1X	180	17.60	b.60.1.1	104189
2c42A	1231	21.52	c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5	129790,129791,129792,129793,129794
1bdyA	123	21.59	b.7.1.1	23190
1y0bA	197	21.70	c.61.1.1	122476
1tvmA	113	21.95		
3cryA	188	22.32		
1azpA	66	22.77	b.34.13.1	37467
2b06A	155	23.60	d.113.1.1	127624
1bqk	124	26.64		
1f4lA	551	30.31	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650
2rb6A	61	31.88		
3b8mA	280	32.02		
2eisA	133	34.12		
1avgI	142	37.77	b.60.1.3	27229
3bjkA	153	37.93		
2dlxA	153	43.50		
1b69A	69	43.52	d.10.1.1	37479
1xweA	151	43.77	b.40.3.3	116125
3bduA	62	43.93		
1c3pA	375	44.06	c.42.1.2	32606
1fbnA	230	45.68	c.66.1.3	34181
2jn0A	61	46.67		
1hpwA	129	48.09	d.24.1.1	61118
1l1oC	181	49.10	b.40.4.3	73480
2i1b	153	51.24		
1bb8A	71	53.42	d.10.1.1	37478
1yliA	153	55.70	d.38.1.1	123651
1q38A	89	55.93	b.1.2.1	95663
1h12A	405	60.61	a.102.1.2	83447
1qqcA	773	63.59	c.55.3.5,e.8.1.1	33724,43013
2a72A	146	64.76		
2o71A	115	65.04		
3b7kA	333	66.71		
2ra2A	64	66.93		
1nhyA	219	72.46	a.45.1.1,c.47.1.5	80520,80521
1ddfA	127	72.65	a.77.1.2	18423
1jjoC	261	78.97		
1cf7A	76	79.94	a.4.5.17	16151
1wfuA	120	81.45	b.1.2.1	114593
1uc7A	125	86.65	c.47.1.1	99163
1wgrA	100	87.80	d.15.1.5	114621
1yy6A	155	88.23		
2f7fA	494	89.90	c.1.17.1,d.41.2.1	133088,133089