# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ddfA	127	25.61	a.77.1.2	18423
2v1oA	151	26.22		
1y0bA	197	29.25	c.61.1.1	122476
2q2bA	179	35.65		
1l1oC	181	36.34	b.40.4.3	73480
2yviA	111	43.06		
1bb8	71	50.19		
1fbnA	230	50.25	c.66.1.3	34181
2b06A	155	58.40	d.113.1.1	127624
1xyiA	66	59.25		
2uurA	245	64.83		
1vpmA	169	65.80	d.38.1.1	113967
1azpA	66	66.15	b.34.13.1	37467
1pm1X	180	71.73	b.60.1.1	104189
2rb6A	61	76.70		
2dlxA	153	82.73		
1cj3A	392	85.35	c.3.1.2,d.16.1.2	30347,37878
2hxwA	237	87.05