# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ze3C 205 1.636 b.1.11.1,b.7.2.1 124974,124975 1np1A 184 2.885 b.60.1.1 27155 1adwA 123 5.109 b.6.1.1 22893 2e5yA 133 5.850 3c8cA 240 5.932 1mbyA 88 6.487 d.223.1.1 78931 1qpxA 218 7.400 b.1.11.1,b.7.2.1 22318,23200 1byqA 228 7.873 d.122.1.1 41100 2jgbA 195 8.314 1rowA 109 8.796 b.1.11.2 97676 1vcdA 126 9.051 d.113.1.1 119970 1yqyA 523 9.650 d.92.1.14,d.166.1.1 123903,123904 1bqk 124 10.05 2p12A 176 10.78 2v40A 459 10.89 2j2zA 218 11.12 b.1.11.1,b.7.2.1 137974,137975 1pm1X 180 11.47 b.60.1.1 104189 1l4iA 206 11.58 b.1.11.1,b.7.2.1 73564,73565 1zn6A 227 11.77 d.303.1.1 125373 2pt7A 330 13.12 2ffsA 157 13.48 d.129.3.7 133391 1n0lA 224 13.48 b.1.11.1,b.7.2.1 79744,79745 1uylA 236 14.12 d.122.1.1 108147 2e2dC 180 14.14 b.40.3.1 131980 1aqt 138 14.81 1sy3A 184 15.96 b.60.1.1 106110 3bwuC 205 16.30 1g6oA 330 16.90 c.37.1.11 32430 1d7qA 143 18.24 b.40.4.5 25331 1j7nA 776 19.53 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1qveA 126 21.48 d.24.1.1 104594 2qqrA 118 22.18 1cg2A 393 24.03 c.56.5.4,d.58.19.1 33844,39360 1wocA 103 27.07 1vetA 124 28.54 d.110.7.1 108553 1vkkA 154 28.71 d.109.1.2 108669 1qppA 218 30.84 b.1.11.1,b.7.2.1 22320,23202 1l1oC 181 31.02 b.40.4.3 73480 1e79H 146 33.65 a.2.10.1,b.93.1.1 15721,28438 3buuA 229 34.36 1c8cA 64 34.73 b.34.13.1 59084 2ra2A 64 37.11 2ddhA 661 37.92 a.29.3.2,a.29.3.2,e.6.1.2 131394,131395,131396 2cw9A 194 38.72 d.17.4.13 130920 1v9fA 325 39.31 d.265.1.3 108448 2pbtA 134 41.24 2gqpA 236 42.10 d.122.1.1 135513 2uv3A 126 42.26 2gfaA 119 43.33 b.34.9.1,b.34.9.1 135089,135090 3cbtA 237 44.99 1azpA 66 45.25 b.34.13.1 37467 1ywxA 102 47.70 d.12.1.3 124165 2e12A 101 48.14 1p9rA 418 49.25 c.37.1.11 94399 1qy5A 269 49.64 d.122.1.1 96573 2rb7A 364 50.01 3bzqA 114 51.35 2rhsB 800 51.42 1bf4A 63 51.65 b.34.13.1 37461 1pysB 785 52.23 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16299,16300,25311,39310,40779,41455 1adeA 431 55.38 c.37.1.10 32213 1ml8A 134 56.02 d.227.1.2 85013 1ir3A 306 57.21 d.144.1.7 41702 2z1cA 75 57.65 1qcsA 211 57.96 b.52.2.3,d.31.1.1 26927,38461 1xyiA 66 58.31 1p5vA 235 59.79 b.1.11.1,b.7.2.1 87812,87813 2co7B 221 60.69 1v1qA 134 63.49 b.40.4.3 113490 2rb6A 61 66.25 1v9kA 228 66.41 d.265.1.3 108449 1u3eM 174 67.18 d.4.1.3,d.285.1.1 107640,107641 1lufA 343 69.88 d.144.1.7 78223 1g87A 614 73.03 a.102.1.2,b.2.2.2 83275,83276 2j1vA 151 73.39 1y5oA 115 73.89 b.55.1.9 122650 2oz8A 389 75.01 2dj6A 115 78.79 1awiA 138 79.45 d.110.1.1 40871 1iweA 457 81.36 c.37.1.10 71486 1yemA 179 82.48 d.63.1.2 116646 2a1vA 144 83.98 d.198.3.1 126019 1sbp 310 84.13 1e0bA 68 85.44 b.34.13.2 37476 1gw5S 142 86.10 d.110.4.2 70633 2qz8A 149 87.32 1cj3A 392 87.64 c.3.1.2,d.16.1.2 30347,37878 1przA 252 87.88 d.265.1.3 95064 1mai 131 88.48 1u8xX 472 88.62 c.2.1.5,d.162.1.2 107741,107742 2acaA 189 89.39 d.63.1.2 126545 2ebeA 106 89.79