# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	4.831		
1c8cA	64	7.053	b.34.13.1	59084
1jmoA	480	12.31	e.1.1.1	77138
2bw2A	140	13.37		
2z1cA	75	18.67		
1jmcA	246	20.59	b.40.4.3,b.40.4.3	25300,25301
2uurA	245	22.02		
2aq6A	147	23.22	b.45.1.1	127156
1jr2A	286	23.67	c.113.1.1	67111
3bduA	62	24.96		
1p4uA	153	26.27	b.1.10.2	87780
1k32A	1045	30.60	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1jsuC	84	30.77	j.55.1.1	46339
1d7qA	143	31.37	b.40.4.5	25331
2v78A	313	33.67		
2ra2A	64	36.20		
1r0uA	148	37.11	b.60.1.5	96741
1dzkA	157	37.51	b.60.1.1	27096
1bb8	71	38.17		
1jlyA	304	39.20	b.42.3.1,b.42.3.1	25587,25588
2q2bA	179	39.26		
1te7A	103	40.40	b.122.1.7	112404
2gfaA	119	40.87	b.34.9.1,b.34.9.1	135089,135090
2bvlA	543	45.02		
2arrA	382	45.27		
1w9aA	147	45.82	b.45.1.1	114408
2oayA	391	49.02		
1qveA	126	50.34	d.24.1.1	104594
1t2wA	145	50.63	b.100.1.1	106289
2h4pA	394	51.25		
3prn	289	51.61		
1r3sA	367	58.36	c.1.22.1	96963
2jxtA	86	59.51		
1jpkA	388	59.64	c.1.22.1	67026
1zhxA	438	61.45	d.338.1.1	125112
1pfo	500	62.41		
1t5hX	504	63.09	e.23.1.1	106449
3tssA	194	64.14	b.40.2.2,d.15.6.1	25160,37749
2jdiH	146	65.34	a.2.10.1,b.93.1.1	138273,138274
2glwA	92	65.47		
3c8xA	206	67.36		
1bb8A	71	68.08	d.10.1.1	37478
3bjoA	103	69.14		
1wspA	84	70.80		
1rf6A	427	70.88	d.68.2.2	97366
3ba3A	145	71.21		
1jrrA	382	71.91	e.1.1.1	63256
2erfA	209	73.31	b.29.1.4	132287
1rljA	139	73.72	c.23.5.7	104983
1feuA	206	73.82	b.53.1.1	59801
2os5A	119	74.73		
2pr5A	132	74.81		
2eisA	133	75.05		
1ucsA	64	75.25	b.85.1.1	88466
2b1xA	470	77.48	b.33.1.2,d.129.3.3	127675,127676
3c2qA	345	78.56		
2gdgA	114	79.40	d.80.1.3	135015
2joeA	139	79.62		
1wkbA	810	79.65		
2gysA	419	82.16	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2vdxA	373	83.51		
2ux0A	143	83.90		
1wz9A	375	85.29		
1a5tA	334	85.72	a.80.1.1,c.37.1.20	18450,32423
2gjgA	248	86.10		
1hg7A	66	87.70	b.85.1.1	28280
2qm0A	275	89.23		
1dptA	117	89.59	d.80.1.3	39862