# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xyiA 66 1.424 1c8cA 64 3.691 b.34.13.1 59084 2uurA 245 4.193 3bduA 62 5.730 1te7A 103 6.051 b.122.1.7 112404 2eisA 133 7.456 2q2bA 179 10.48 2vgbA 528 11.22 1j58A 385 11.35 b.82.1.2 71531 2erfA 209 11.52 b.29.1.4 132287 2ra2A 64 11.91 1yliA 153 13.86 d.38.1.1 123651 1vpmA 169 14.15 d.38.1.1 113967 2bw2A 140 16.03 3c2qA 345 16.32 1jsuC 84 17.57 j.55.1.1 46339 1dzkA 157 17.74 b.60.1.1 27096 2vgfA 528 19.20 3tssA 194 19.42 b.40.2.2,d.15.6.1 25160,37749 2sak 121 20.59 2sakA 121 20.59 d.15.5.1 37711 2os5A 119 20.75 6ldhA 329 20.81 c.2.1.5,d.162.1.1 30161,42128 2ux0A 143 21.33 2gysA 419 22.24 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2jn0A 61 23.54 1r0uA 148 24.04 b.60.1.5 96741 2vgiA 528 24.32 2z1cA 75 24.65 3bjkA 153 24.95 2v78A 313 26.23 3bjoA 103 26.60 2dhoA 235 26.86 2v7pA 310 28.39 1r5lA 262 28.48 a.5.3.1,c.13.1.1 97099,97100 2vggA 528 28.50 2aukA 190 29.41 1jlyA 304 30.83 b.42.3.1,b.42.3.1 25587,25588 1jmcA 246 31.29 b.40.4.3,b.40.4.3 25300,25301 1g8lA 411 34.34 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1vclA 432 35.53 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1rljA 139 37.11 c.23.5.7 104983 1hfoA 113 39.29 d.80.1.3 61006 1z94A 147 40.18 d.129.3.5 124740 1d7qA 143 40.42 b.40.4.5 25331 1sxvA 172 41.79 1x82A 190 42.28 b.82.1.7 114955 2au7A 175 44.97 1bb8A 71 45.72 d.10.1.1 37478 3c8xA 206 45.76 1wspA 84 45.99 1t6aA 126 46.82 d.129.8.1 106555 2aq6A 147 48.43 b.45.1.1 127156 2gfaA 119 48.47 b.34.9.1,b.34.9.1 135089,135090 1pfo 500 48.57 1jl0A 334 50.93 d.156.1.1 63155 1ucsA 64 51.79 b.85.1.1 88466 1oh0A 131 51.92 d.17.4.3 87004 2gjgA 248 52.58 1hyeA 313 52.65 c.2.1.5,d.162.1.1 61400,61401 1hs6A 611 52.73 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1khoA 370 53.85 a.124.1.1,b.12.1.3 72489,72490 2pr5A 132 55.31 1cdcA 99 55.33 b.1.1.1 19746 2qe7H 135 55.35 3c9qA 205 55.75 1g6gA 127 56.85 b.26.1.2 23916 1uesA 191 57.01 a.2.11.1,d.44.1.1 107798,107799 1p4uA 153 58.17 b.1.10.2 87780 1ohpA 125 59.88 d.17.4.3 118702 2bqxA 173 61.25 1ez4A 318 61.32 c.2.1.5,d.162.1.1 64917,64918 2htdA 140 61.78 2bvlA 543 62.79 1mi8A 158 63.19 b.86.1.2 91279 1uxjA 309 63.57 c.2.1.5,d.162.1.1 108112,108113 1w9aA 147 63.94 b.45.1.1 114408 1wm3A 72 64.83 d.15.1.1 114736 1iwlA 182 65.22 b.125.1.1 83757 1dcjA 81 65.85 d.68.3.3 59115 1hg7A 66 67.44 b.85.1.1 28280 1bb8 71 68.28 2nnwA 376 68.57 2jxtA 86 69.37 1qveA 126 69.78 d.24.1.1 104594 1g2rA 100 69.97 d.192.1.1 60231 1ew0A 130 70.93 d.110.3.2 40905 1el6A 219 71.00 d.182.1.1 42606 1feuA 206 71.42 b.53.1.1 59801 1s3rA 535 71.87 2e5yA 133 72.81 2jfrA 234 73.74 1gmuA 143 74.41 b.107.1.1,d.58.38.1 65335,65336 2joeA 139 77.76 2h1qA 270 78.49 1t2wA 145 79.83 b.100.1.1 106289 1pfoA 500 80.53 f.9.1.1 43826 1yz7A 188 80.91 2pv4A 145 81.10 1a5tA 334 81.40 a.80.1.1,c.37.1.20 18450,32423 1txoA 237 81.91 d.219.1.1 112781 1r7sA 106 84.47 d.15.4.1 97207 1a64A 97 84.67 b.1.1.1 19750 3prn 289 84.97 1uerA 191 85.97 a.2.11.1,d.44.1.1 107790,107791 1pzgA 331 87.04 c.2.1.5,d.162.1.1 95425,95426 1jr2A 286 87.52 c.113.1.1 67111 1earA 147 88.93 b.107.1.1,d.58.38.1 64875,64876 1gcvB 136 88.99 a.1.1.2 15589 1wkbA 810 89.26 1w4sA 174 89.87