# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	11.70	b.34.13.1	59084
2aq6A	147	12.77	b.45.1.1	127156
2uurA	245	13.99		
1xyiA	66	14.00		
1bb8	71	14.41		
1dzkA	157	16.55	b.60.1.1	27096
1r0uA	148	18.72	b.60.1.5	96741
3bduA	62	19.53		
1jmcA	246	21.96	b.40.4.3,b.40.4.3	25300,25301
2eisA	133	24.15		
2erfA	209	26.00	b.29.1.4	132287
1p4uA	153	27.65	b.1.10.2	87780
2bmaA	470	29.32		
2q2bA	179	33.38		
1q2bA	434	33.56	b.29.1.10	95624
2v78A	313	33.93		
1bb8A	71	35.55	d.10.1.1	37478
1jsuC	84	41.99	j.55.1.1	46339
2ra2A	64	44.27		
2pr5A	132	46.80		
1yliA	153	46.99	d.38.1.1	123651
1k32A	1045	47.09	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2z1cA	75	49.97		
1w9aA	147	50.50	b.45.1.1	114408
1jmoA	480	55.85	e.1.1.1	77138
1g6gA	127	56.34	b.26.1.2	23916
2gjgA	248	57.91		
3tssA	194	58.41	b.40.2.2,d.15.6.1	25160,37749
1ew0A	130	59.11	d.110.3.2	40905
1jr2A	286	61.00	c.113.1.1	67111
1vpmA	169	65.00	d.38.1.1	113967
1j58A	385	66.33	b.82.1.2	71531
1te7A	103	66.41	b.122.1.7	112404
3cp3A	148	67.61		
3bjkA	153	68.40		
1ucsA	64	69.01	b.85.1.1	88466
1r5lA	262	70.12	a.5.3.1,c.13.1.1	97099,97100
2glwA	92	71.23		
2bw2A	140	72.18		
1hg7A	66	75.94	b.85.1.1	28280
2ux0A	143	76.10		
1jlyA	304	76.37	b.42.3.1,b.42.3.1	25587,25588
1z94A	147	77.68	d.129.3.5	124740
2gysA	419	79.48	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1vjyA	303	82.35	d.144.1.7	108633
1rf6A	427	82.55	d.68.2.2	97366
2qm0A	275	85.29		
2isbA	192	85.72	c.8.9.1	137601
2aukA	190	85.96		
3bjoA	103	89.53