# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	9.654		
1c8cA	64	10.86	b.34.13.1	59084
1xyiA	66	12.14		
1r0uA	148	20.46	b.60.1.5	96741
1k32A	1045	20.76	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1p4uA	153	22.33	b.1.10.2	87780
1jmoA	480	24.41	e.1.1.1	77138
2z1cA	75	24.58		
1bb8A	71	25.28	d.10.1.1	37478
2v78A	313	25.95		
2uurA	245	26.75		
1jmcA	246	28.05	b.40.4.3,b.40.4.3	25300,25301
3bduA	62	29.25		
1q2bA	434	33.58	b.29.1.10	95624
2q2bA	179	34.18		
2aq6A	147	34.39	b.45.1.1	127156
2eisA	133	34.50		
2erfA	209	35.44	b.29.1.4	132287
1dzkA	157	39.18	b.60.1.1	27096
1jsuC	84	39.38	j.55.1.1	46339
1jlyA	304	40.93	b.42.3.1,b.42.3.1	25587,25588
2qm0A	275	42.29		
2bmaA	470	42.42		
2gysA	419	47.11	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1vpmA	169	53.88	d.38.1.1	113967
3c2qA	345	55.29		
1wkbA	810	55.46		
1jr2A	286	56.83	c.113.1.1	67111
1te7A	103	58.11	b.122.1.7	112404
1rf6A	427	59.35	d.68.2.2	97366
1r5lA	262	62.22	a.5.3.1,c.13.1.1	97099,97100
2joeA	139	63.94		
1t2wA	145	63.95	b.100.1.1	106289
2pqcA	445	64.06		
2pr5A	132	65.10		
3tssA	194	68.93	b.40.2.2,d.15.6.1	25160,37749
2bw2A	140	68.94		
2j01Z	206	73.04		
2ra2A	64	73.18		
1yliA	153	74.17	d.38.1.1	123651
1feuA	206	78.04	b.53.1.1	59801
1j58A	385	79.60	b.82.1.2	71531
2arrA	382	80.00		
1ucsA	64	80.14	b.85.1.1	88466
3prn	289	83.40		
2cxyA	125	85.17		
2glwA	92	85.17		
1g6gA	127	85.32	b.26.1.2	23916
2ux0A	143	89.29