# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	10.91		
2aq6A	147	11.81	b.45.1.1	127156
1dzkA	157	12.32	b.60.1.1	27096
3bduA	62	12.77		
1c8cA	64	15.25	b.34.13.1	59084
2uurA	245	15.62		
1bb8	71	16.79		
2eisA	133	17.70		
1w9aA	147	19.84	b.45.1.1	114408
2ra2A	64	20.79		
1jmcA	246	28.89	b.40.4.3,b.40.4.3	25300,25301
1p4uA	153	30.13	b.1.10.2	87780
1jmoA	480	33.62	e.1.1.1	77138
1k32A	1045	34.39	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1bb8A	71	36.50	d.10.1.1	37478
1jlyA	304	37.15	b.42.3.1,b.42.3.1	25587,25588
1uliA	460	38.61	b.33.1.2,d.129.3.3	107921,107922
1r0uA	148	39.09	b.60.1.5	96741
1jsuC	84	39.30	j.55.1.1	46339
1r5lA	262	42.90	a.5.3.1,c.13.1.1	97099,97100
2v78A	313	43.41		
1vpmA	169	44.98	d.38.1.1	113967
2sakA	121	45.09	d.15.5.1	37711
2sak	121	48.24		
2erfA	209	49.62	b.29.1.4	132287
2q2bA	179	49.68		
3tssA	194	50.78	b.40.2.2,d.15.6.1	25160,37749
2ux0A	143	51.46		
2bw2A	140	53.47		
1j58A	385	53.96	b.82.1.2	71531
1yliA	153	55.19	d.38.1.1	123651
2b1xA	470	55.94	b.33.1.2,d.129.3.3	127675,127676
3buuA	229	59.05		
2jfrA	234	61.85		
1rljA	139	63.70	c.23.5.7	104983
2z1cA	75	64.13		
1z94A	147	64.40	d.129.3.5	124740
1uesA	191	65.32	a.2.11.1,d.44.1.1	107798,107799
1q2bA	434	65.43	b.29.1.10	95624
2gjgA	248	65.58		
1xbbA	291	66.47	d.144.1.7	115077
1t2wA	145	67.95	b.100.1.1	106289
1x82A	190	68.65	b.82.1.7	114955
1rf6A	427	70.19	d.68.2.2	97366
2bmaA	470	70.96		
2arrA	382	71.01		
1oh0A	131	71.72	d.17.4.3	87004
2bvlA	543	74.16		
1ucsA	64	76.54	b.85.1.1	88466
1jr2A	286	77.08	c.113.1.1	67111
2glwA	92	78.80		
1vjyA	303	81.25	d.144.1.7	108633
2j0wA	449	81.75	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
2avwA	311	84.38		
1cdcA	99	84.54	b.1.1.1	19746
2aukA	190	89.44