# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	4.674		
1jmoA	480	17.05	e.1.1.1	77138
1jlyA	304	17.40	b.42.3.1,b.42.3.1	25587,25588
1p4uA	153	17.72	b.1.10.2	87780
1c8cA	64	17.91	b.34.13.1	59084
1q2bA	434	20.99	b.29.1.10	95624
1bb8	71	21.49		
3bduA	62	26.17		
1k32A	1045	26.86	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1dzkA	157	30.79	b.60.1.1	27096
2bvlA	543	32.30		
2z1cA	75	32.45		
1r0uA	148	33.50	b.60.1.5	96741
1t2wA	145	35.88	b.100.1.1	106289
1jsuC	84	36.10	j.55.1.1	46339
2erfA	209	36.45	b.29.1.4	132287
2arrA	382	38.08		
1jmcA	246	42.18	b.40.4.3,b.40.4.3	25300,25301
2bmaA	470	43.69		
2jdiH	146	44.90	a.2.10.1,b.93.1.1	138273,138274
2ra2A	64	45.13		
2eisA	133	45.41		
1jr2A	286	45.71	c.113.1.1	67111
2bw2A	140	47.29		
1r5lA	262	48.18	a.5.3.1,c.13.1.1	97099,97100
2uurA	245	51.41		
1bb8A	71	51.83	d.10.1.1	37478
1ucsA	64	58.81	b.85.1.1	88466
1jrrA	382	60.59	e.1.1.1	63256
1uliA	460	61.89	b.33.1.2,d.129.3.3	107921,107922
2v78A	313	63.05		
3bjoA	103	66.27		
1rf6A	427	66.28	d.68.2.2	97366
2b6dA	345	67.35	c.94.1.2	127985
2gdgA	114	67.65	d.80.1.3	135015
2b1xA	470	67.89	b.33.1.2,d.129.3.3	127675,127676
2qm0A	275	67.90		
2jfrA	234	67.94		
2gfaA	119	68.72	b.34.9.1,b.34.9.1	135089,135090
2aq6A	147	69.68	b.45.1.1	127156
2os5A	119	71.29		
2q2bA	179	71.57		
1vpmA	169	73.88	d.38.1.1	113967
2pv4A	145	77.41		
1ryoA	327	78.79	c.94.1.2	98108
1dptA	117	79.08	d.80.1.3	39862
2glwA	92	79.20		
2j01Z	206	79.68		
1hg7A	66	87.64	b.85.1.1	28280